Job Description P04395 Confidence 100.00% Date Thu Jan 5 10:58:16 GMT 2012 Rank 2 Aligned Residues 266 % Identity 23% Template c2jhnB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna-glycosylase; PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus Resolution 1.8 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	T	L	N	W	Q	P	P	Y	D	W	S	W	M	L	G	F	L	A	A	R	A	V	S	S	V	E	T	V	A	D	S	Y	Y	A	R	S	L	A	V	G	E	Y	R	G	V	V	T	A	I	P	D	I	A	R	H	T	L	H	I	N	L	S	A	G	L	E	P	V	A	A	E	C	L	A	K	M	S	R
Query Conservation
Alig confidence																																																										.											.
Template Conservation																																																										.											.
Template Sequence		M	W	R	I	E	L	K	H	A	V	N	W	E	L	K	M	K	F	F	V	L	P	E	L	P	T	P	D	V	V	E	S	G	V	W	R	R	A	I	V	L	D	G	R	A	V	A	V	M	A	Y	P	E	S	E	R	.	T	I	V	V	E	G	N	F	E	N	.	R	E	W	E	A	V	R	R	K	L	V	E
Template Known Secondary structure								S	S										T		S	S	T	T	S		S	S					T	T									T	T												T	T	.							S	S		G	.	G	G
Template Predicted Secondary structure																																																										.											.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.
Predicted Secondary structure													.	.	.	.	.	.																		.	.																																								.
Query SS confidence													.	.	.	.	.	.																		.	.																																								.
Query Sequence		L	F	D	L	Q	C	N	P	Q	I	V	.	.	.	.	.	.	N	G	A	L	G	R	L	G	A	A	R	P	G	L	R	L	P	.	.	G	C	V	D	A	F	E	Q	G	V	R	A	I	L	G	Q	L	V	S	V	A	M	A	A	K	L	T	A	R	V	A	Q	L	Y	G	E	R	L	D	.	D	F	P	E
Query Conservation													.	.	.	.	.	.																		.	.																																								.
Alig confidence							.						.	.	.	.	.	.																		.	.																																								.
Template Conservation							.
Template Sequence		Y	L	G	L	Q	.	N	P	E	E	L	Y	R	F	M	D	G	D	E	K	L	R	M	L	K	N	R	F	Y	G	F	G	R	A	G	L	M	S	M	S	V	F	E	G	I	A	K	A	I	I	Q	Q	Q	I	S	F	V	V	A	E	K	L	A	A	K	I	V	G	R	F	G	D	E	V	E	W	N	G	L	K
Template Known Secondary structure				T		S	.											T	S										T	T	T			S				S		S	S											T	T	T	S																	S						T	T
Template Predicted Secondary structure							.
Template SS confidence
		79	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	C	F	P	T	P	Q	R	L	A	A	A	D	P	Q	A	L	K	A	L	G	M	P	L	K	R	A	E	A	L	I	H	L	A	N	A	A	L	E	G	T	L	P	M	T	I	P	G	D	V	E	Q	A	M	K	T	L	Q	T	F	P	G	I	G	R	W	T	A	N	Y	F	A	L	R	G	W	Q	A	K
Query Conservation
Alig confidence																																														.	.	.																																.
Template Conservation																																														.	.	.																																.
Template Sequence		F	Y	G	F	P	T	Q	E	A	I	L	K	A	G	V	E	G	L	R	E	C	G	L	S	R	R	K	A	E	L	I	V	E	I	A	K	E	E	N	L	E	E	L	K	.	.	.	E	W	G	E	E	E	A	Y	E	Y	L	T	S	F	K	G	I	G	R	W	T	A	E	L	V	L	S	I	A	L	G	.	K
Template Known Secondary structure																							T														T		S		G	G	G	G	G	.	.	.	G	S											T	S	T	T													T	T		.
Template Predicted Secondary structure																																														.	.	.																																.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.								.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.										.
Query SS confidence																			.	.	.	.	.	.	.										.
Query Sequence		D	V	F	L	P	D	D	Y	L	I	K	Q	R	F	P	G	M	.	.	.	.	.	.	.	T	P	A	Q	I	R	R	Y	A	.	E	R	W	K	P	W	R	S	Y	A	L	L	H	I	W	Y
Query Conservation																			.	.	.	.	.	.	.										.
Alig confidence																			.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		N	V	F	P	A	D	D	L	G	V	R	R	A	V	S	R	L	Y	F	N	G	E	I	Q	S	A	E	K	V	R	E	I	A	R	E	R	F	G	R	F	A	R	D	I	L	F	Y	L	F	L
Template Known Secondary structure						T	T													S	T	T																T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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