Job Description P04395 Confidence 100.00% Date Thu Jan 5 10:58:16 GMT 2012 Rank 5 Aligned Residues 240 % Identity 22% Template c1yqmA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna Resolution 2.50 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.								.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.
Query Sequence		E	T	V	A	D	S	Y	Y	A	R	S	L	A	V	G	E	Y	R	G	V	V	T	A	I	P	D	I	A	R	H	T	L	H	I	N	L	S	A	G	L	E	P	V	A	A	E	C	L	A	K	M	S	R	L	F	D	L	Q	C	N	P	Q	I	V	.	.	.	.	.	.	.	N	G	A	L	G	R	L	G	A
Query Conservation																																																																		.	.	.	.	.	.	.
Alig confidence															.	.	.	.													.																																			.	.	.	.	.	.	.
Template Conservation															.	.	.	.													.
Template Sequence		R	E	Q	S	P	A	H	W	S	G	V	L	A	.	.	.	.	D	Q	V	W	T	L	T	Q	T	E	E	Q	.	L	H	C	T	V	Y	R	S	Q	A	S	R	P	T	P	D	E	L	E	A	V	R	K	Y	F	Q	L	D	V	T	L	A	Q	L	Y	H	H	W	G	S	V	D	S	H	F	Q	E	V	A	Q
Template Known Secondary structure						T	T							T	.	.	.	.	T									S	S		.																									T	T	T	T	S																					T
Template Predicted Secondary structure															.	.	.	.													.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.																						.
Query SS confidence																																																	.	.																						.
Query Sequence		A	R	P	G	L	R	L	P	G	C	V	D	A	F	E	Q	G	V	R	A	I	L	G	Q	L	V	S	V	A	M	A	A	K	L	T	A	R	V	A	Q	L	Y	G	E	R	L	D	.	.	D	F	P	E	Y	I	C	F	P	T	P	Q	R	L	A	A	A	D	P	Q	A	.	L	K	A	L	G	M	P	L	K
Query Conservation																																																	.	.																						.
Alig confidence												.																																					.	.																						.							.
Template Conservation												.																																																																			.
Template Sequence		K	F	Q	G	V	R	L	L	R	Q	.	D	P	I	E	C	L	F	S	F	I	C	S	S	C	N	N	I	A	R	I	T	G	M	V	E	R	L	C	Q	A	F	G	P	R	L	I	Q	L	D	D	V	T	Y	H	G	F	P	S	L	Q	A	L	A	G	P	E	V	E	A	H	L	R	K	L	G	L	.	G	Y
Template Known Secondary structure		T		T	T							.											T	T	T	T																		S							T	T													T	S	T	T								T	T		.	T	T
Template Predicted Secondary structure												.																																																																			.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.																																																					.	.	.
Query SS confidence																						.	.	.	.	.																																																					.	.	.
Query Sequence		R	A	E	A	L	I	H	L	A	N	A	A	L	E	G	T	L	P	M	T	.	.	.	.	.	I	P	G	D	V	E	Q	A	M	K	T	L	Q	T	F	P	G	I	G	R	W	T	A	N	Y	F	A	L	R	G	W	Q	A	K	D	V	F	L	P	D	D	Y	L	I	K	Q	R	F	P	G	M	T	.	.	.
Query Conservation																						.	.	.	.	.																																																					.	.	.
Alig confidence																						.	.	.	.	.																																								.													.	.	.
Template Conservation																																																																		.
Template Sequence		R	A	R	Y	V	S	A	S	A	R	A	I	L	E	E	Q	G	G	L	A	W	L	Q	Q	L	R	E	S	S	Y	E	E	A	H	K	A	L	C	I	L	P	G	V	G	T	Q	V	A	D	C	I	C	L	M	A	L	D	K	P	Q	A	V	P	V	.	D	V	H	M	W	H	I	A	Q	R	D	Y	S	W	H
Template Known Secondary structure																	S		S							T	T	S	S										T	T	S	T	T														S	S		T	T					.
Template Predicted Secondary structure																																																																		.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
																250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	Q	I	R	R	Y	A	E	R	W	K	P	W	R	S	Y	A	L	L	H	I	W	Y	T	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	T	S	Q	A	K	G	P	S	P	Q	T	N	K	E	L	G	N	F	F	R	S	L	W	G	P	Y	A	G	W	A	Q	A	V	L	F	S	A	D
Template Known Secondary structure			S	S		S		S	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions