Job Description P18811 Confidence 99.92% Date Thu Jan 5 11:37:10 GMT 2012 Rank 57 Aligned Residues 264 % Identity 14% Template d1gcaa_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.70

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.
Predicted Secondary structure																														.																																											.
Query SS confidence																														.																																											.
Query Sequence		V	I	G	L	I	V	R	D	L	S	A	P	F	Y	A	E	L	T	A	G	L	T	E	A	L	E	A	Q	.	G	R	M	V	F	L	L	H	G	G	K	D	G	E	Q	L	A	Q	R	F	S	L	L	L	N	Q	G	V	D	G	V	V	I	A	G	A	A	G	S	S	D	D	.	L	R	R	M	A	E	E	K
Query Conservation																														.																																											.
Alig confidence																														.																																											.
Template Conservation
Template Sequence		R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	K	D	G	K	S	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R	G	Q
Template Known Secondary structure								S		T	T																	T	S	T	T									T	T															T	T		S							S	S	G	G	G											T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.							.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.													.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	P	V	I	F	A	S	R	A	S	Y	.	.	.	.	.	.	L	D	D	V	D	T	V	R	P	D	N	M	Q	A	A	Q	L	L	T	E	H	L	I	R	N	G	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	R	I	A	W	L	G	G	Q	S	S	S	L	T	R	A	E	R	V	G	G	Y	C
Query Conservation														.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	V	I	Q	G	D	L	I	A	K	H	W	Q	A	N	Q	G	W	D	L	N	K	D	G	K	I	Q	Y	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T	Y	V	V
Template Known Secondary structure		T							S	S									T		T	T																											G	G	G		T	T		S	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		A	T	L	L	K	F	G	L	P	F	H	S	D	W	V	L	E	C	T	S	S	Q	K	Q	A	A	E	A	I	T	A	L	L	R	H	N	P	.	.	T	I	S	A	V	V	C	Y	N	E	T	I	A	M	G	A	W	F	G	L	L	K	A	G	R	Q	S	G	E	S	G	V	D	R	Y	F	E	Q	Q	V	S
Query Conservation																																							.	.
Alig confidence																																							.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	L	N	D	K	G	I	Q	T	E	Q	L	A	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	.	.	.	.	.	.	.	.	.	K	S	S	I	P
Template Known Secondary structure							T	T												T	T														T	S	T	T	G	G	G							S	S														T	T	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.													.	.	.	230	.
		284	.	.	.	.	.	290	.	.	.	.	.	.				.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.									.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure															.	.	.																																	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.																																	.	.	.	.	.	.	.	.
Query Sequence		L	A	A	F	T	D	A	T	P	T	T	L	D	.	.	.	D	I	P	V	T	W	A	S	T	P	A	R	E	L	G	I	T	L	A	D	R	M	M	Q	K	I	T	H	E	E	T	H	.	.	.	.	.	.	.	.	S	R	N	L	I	I	P	A	R	L	I	A	A
Query Conservation															.	.	.																																	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	G	V	D	A	L	P	E	A	L	A	L	V	K	S	G	A	M	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	E	G	K	G	A	A	D	G	T	S	W	K	I	E	N	K	I	V	R	V	P	Y	V	G	V	D	K
Template Known Secondary structure					S	B												T	S	S		B																						T	T	S		T	T	T	T	S					B	T	T											T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions