Job Description P18811 Confidence 86.73% Date Thu Jan 5 11:37:10 GMT 2012 Rank 418 Aligned Residues 213 % Identity 14% Template c3qi7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Resolution 1.86 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.														.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		I	G	L	I	V	R	D	L	S	A	P	F	Y	A	E	L	T	A	G	L	T	E	A	L	E	A	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	R	M	V	F	L	L	H	G	G	K	D	G	E	Q	L	A	Q	R	F	S	L	L	L	.	.	.	N	Q	G	V	D	G	V	V	I	A	G	A	A
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence													.	.																.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation													.	.
Template Sequence		V	A	V	V	T	Q	P	L	S	E	N	.	.	K	V	Q	Y	N	X	V	E	E	X	A	K	E	Y	E	E	E	N	K	I	D	K	T	K	V	K	Q	T	I	K	H	V	V	L	P	E	N	F	T	S	N	I	D	S	A	I	N	K	I	V	K	L	A	D	D	K	E	V	Q	A	I	V	V	S	T	D	Q
Template Known Secondary structure									T	T	T		.	.																		T	T																	T	T	G	G	G	G										G	G	G	G		T	T									S	S
Template Predicted Secondary structure													.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.								160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.
Predicted Secondary structure																															.	.	.	.	.	.	.																																			.	.
Query SS confidence																															.	.	.	.	.	.	.																																			.	.
Query Sequence		G	S	S	D	D	L	R	R	M	A	E	E	K	A	I	P	V	I	F	A	S	R	A	S	Y	L	D	D	V	.	.	.	.	.	.	.	D	T	V	R	P	D	N	M	Q	A	A	Q	L	L	T	E	H	L	I	R	N	G	H	Q	R	I	A	W	L	G	G	Q	S	S	.	.	S	L	T	R	A	E	R	V
Query Conservation																															.	.	.	.	.	.	.																																			.	.
Alig confidence																															.	.	.	.	.	.	.																																			.	.
Template Conservation
Template Sequence		A	G	L	L	P	A	L	Q	K	V	K	E	K	R	P	E	I	I	T	I	S	A	P	X	G	D	D	K	N	Q	L	S	Q	F	V	D	V	N	L	G	V	S	A	E	E	R	G	K	V	L	A	E	R	S	K	E	X	G	A	K	A	F	I	H	Y	A	S	T	D	D	L	K	D	V	N	I	A	K	R	L
Template Known Secondary structure																T	T	S					S	S			S									S	S																					T	T		S								T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230							.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																															.	.	.	.	.	.																																									.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.																																									.	.	.	.	.
Query Sequence		G	G	Y	C	A	T	L	L	K	F	G	L	P	F	H	S	D	W	V	L	E	C	T	S	S	Q	K	Q	A	.	.	.	.	.	.	A	E	A	I	T	A	L	L	R	H	N	P	T	I	S	A	V	V	C	Y	N	E	T	I	A	M	G	A	W	F	G	L	L	K	A	G	R	Q	S	G	.	.	.	.	.
Query Conservation																															.	.	.	.	.	.																																									.	.	.	.	.
Alig confidence																															.	.	.	.	.	.																																									.	.	.	.	.
Template Conservation
Template Sequence		E	X	I	K	E	T	C	K	N	I	G	L	P	F	V	Q	V	N	T	P	N	I	N	T	E	E	D	K	N	K	V	K	Q	F	L	N	E	D	I	E	K	Q	V	K	K	Y	G	K	D	I	N	V	F	G	V	N	E	Y	X	D	E	V	I	L	T	K	A	L	E	L	K	Y	I	V	A	E	Q	S	N	P
Template Known Secondary structure											T	T												S	S	T																							S							S	S																	B	B				S	S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
								271	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	E	S	G	V	D	R	Y	F	E	Q	Q
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	I	Q	T	Y	P	S	V	X	G	L	K	I	S	E	K
Template Known Secondary structure			T	T	T	T						T					G	G
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions