Job Description P18811 Confidence 99.96% Date Thu Jan 5 11:37:10 GMT 2012 Rank 42 Aligned Residues 251 % Identity 19% Template c3jvdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum Resolution 2.30 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	V	I	G	L	I	V	R	D	L	S	A	P	F	Y	A	E	L	T	A	G	L	T	E	A	L	E	A	Q	G	R	M	V	F	L	L	H	G	G	K	D	G	E	Q	L	A	Q	R	F	S	L	L	L	N	Q	G	V	D	G	V	V	I	A	G	A	A	G	S	S	D	D	L	R	R	M	A	E	E	K
Query Conservation
Alig confidence																																										.																													.	.	.	.	.	.	.	.
Template Conservation																																										.																													.	.	.	.	.	.	.	.
Template Sequence		S	A	L	V	G	V	I	V	P	D	L	S	N	E	Y	Y	S	E	S	L	Q	T	I	Q	Q	D	L	K	A	A	G	Y	Q	M	L	V	A	E	A	N	.	S	V	Q	A	Q	D	V	V	M	E	S	L	I	S	I	Q	A	A	G	I	I	H	V	P	V	V	G	S	.	.	.	.	.	.	.	.	I	A	E
Template Known Secondary structure										S		S	S	S																		T										.	S															T		S								T	T		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.																													.	.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.									.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	P	V	I	F	A	S	R	A	S	Y	L	D	D	V	D	T	V	R	P	D	N	M	Q	A	A	Q	L	L	T	E	H	L	I	R	N	G	H	Q	R	I	A	W	L	G	G	Q	S	S	S	L	T	R	A	E	R	V	G	G	Y	C	A	T	L	L	K	F	G	L	P	F	H	S	D	W	V	L	E	C
Query Conservation
Alig confidence												.	.	.	.																																																																.	.	.
Template Conservation												.	.	.	.																																																																.	.	.
Template Sequence		G	I	P	M	V	Q	L	T	R	P	.	.	.	.	G	F	P	R	V	L	C	D	D	E	A	G	F	F	Q	L	T	E	S	V	L	G	G	S	G	M	N	I	A	A	L	V	G	E	E	S	L	S	T	T	Q	E	R	M	R	G	I	S	H	A	A	S	I	Y	G	A	E	V	T	F	H	F	G	.	.	.
Template Known Secondary structure			S									.	.	.	.		S																					S	S	S								S		T	T	S																	T	T									.	.	.
Template Predicted Secondary structure												.	.	.	.																																																																.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	S	Q	K	Q	A	A	E	A	I	T	A	L	L	R	H	N	P	T	I	S	A	V	V	C	Y	N	E	T	I	A	M	G	A	W	F	G	L	L	K	A	G	R	Q	S	G	E	S	G	V	D	R	Y	F	E	Q	Q	V	S	L	A	A	F	T	D	A	T	P	T	T	L	D	D	I	P	V	T	W	A
Query Conservation
Alig confidence		.																																													.	.	.	.	.	.	.	.	.
Template Conservation		.																																													.	.	.	.	.	.	.	.	.
Template Sequence		.	H	Y	S	V	E	S	G	E	E	M	A	Q	V	V	F	N	N	G	L	P	D	A	L	I	V	A	S	P	R	L	M	A	G	V	M	R	A	F	T	R	L	N	V	R	.	.	.	.	.	.	.	.	.	V	P	H	D	V	V	I	G	G	Y	D	D	P	E	W	Y	S	F	V	G	A	G	I	T	T	F
Template Known Secondary structure		.		S	S														T				S																				T	T			.	.	.	.	.	.	.	.	.	T	T	T	T							S			G	G	G	G	G	S	T	T	S
Template Predicted Secondary structure		.																																													.	.	.	.	.	.	.	.	.
Template SS confidence
			213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.										.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	P	A	R	E	L	G	I	T	L	A	D	R	M	M	Q	K	I	T	H	E	E	T	H	S	R	N	L	I	I	P	A	R	L	I	A	A	K
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		V	P	P	H	E	E	M	G	K	E	A	V	R	L	L	V	D	L	I	E	N	P	.	.	E	T	G	D	V	V	L	Q	G	Q	V	I	L	R	G
Template Known Secondary structure																						S		.	.															G
Template Predicted Secondary structure																								.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions