Job Description P18811 Confidence 99.92% Date Thu Jan 5 11:37:10 GMT 2012 Rank 56 Aligned Residues 264 % Identity 11% Template c3gbvB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure												.																									.	.	.	.																																								.	.
Query SS confidence												.																									.	.	.	.																																								.	.
Query Sequence		Q	S	G	V	I	G	L	I	V	R	.	D	L	S	A	P	F	Y	A	E	L	T	A	G	L	T	E	A	L	E	A	Q	G	R	M	.	.	.	.	V	F	L	L	H	G	G	K	D	G	E	Q	L	A	Q	R	F	S	L	L	L	N	Q	G	V	D	G	V	V	I	A	G	A	A	G	S	S	D	D	.	.
Query Conservation												.																									.	.	.	.																																								.	.
Alig confidence												.																									.	.	.	.																																								.	.
Template Conservation
Template Sequence		K	K	Y	T	F	A	C	L	L	P	K	H	L	E	G	E	Y	W	T	D	V	Q	K	G	I	R	E	A	V	T	T	Y	S	D	F	N	I	S	A	N	I	T	H	Y	D	P	Y	D	Y	N	S	F	V	A	T	S	Q	A	V	I	E	E	Q	P	D	G	V	X	F	A	P	T	V	P	Q	Y	T	K	G	F
Template Known Secondary structure															T	T	S																T	G	G	G											T	T																		S								S
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.							.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		L	R	R	M	A	E	E	K	A	I	P	V	I	F	A	S	R	A	S	Y	L	D	D	V	D	T	V	R	P	D	N	M	Q	A	A	Q	L	L	T	E	H	L	I	R	N	G	H	Q	R	.	.	.	.	.	.	I	A	W	L	G	G	Q	S	S	S	L	T	R	A	E	R	V	G	G	Y	C	A	T	L	L
Query Conservation																																																			.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	A	L	N	E	L	G	I	P	Y	I	Y	I	D	S	Q	I	K	D	A	P	P	L	A	F	F	G	Q	N	S	H	Q	S	G	Y	F	A	A	R	X	L	X	L	L	A	V	N	D	R	E	I	V	I	F	R	K	I	H	E	G	V	I	G	S	N	Q	Q	E	S	R	E	I	G	F	R	Q	Y	X	Q
Template Known Secondary structure									T							S	S			T	T	S			S																						S	T	T		S									B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	G	L	P	F	H	S	D	W	V	L	E	C	T	S	S	Q	K	Q	A	A	E	A	I	T	A	L	L	R	H	N	P	T	I	S	A	V	V	C	Y	N	E	T	I	A	M	G	A	W	F	G	L	L	K	A	G	R	Q	S	G	E	S	G	V	D	R	Y	F	E	Q	Q	V	S	L	A	A	F	T	D
Query Conservation
Alig confidence																					.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	H	H	P	A	C	N	I	L	E	L	N	L	H	A	D	L	E	D	.	.	S	R	X	L	D	D	F	F	R	E	H	P	D	V	K	H	G	I	T	F	N	S	K	V	Y	I	I	G	E	Y	L	Q	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	S	D	F	S	L	I	G	Y	D	L
Template Known Secondary structure					T	T	S									T	T				.	.												T	T							S	S	S		T										T	.	.	.	.	.	.	.	.	.	.	.	.	.	T			S							S
Template Predicted Secondary structure																					.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.														.	.	.	280	.	.	.	.	.	.	.	.
		290	.	.	.	.	.	.				.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		A	T	P	T	T	L	D	.	.	.	D	I	P	V	T	W	A	S	T	P	A	R	E	L	G	I	T	L	A	D	R	M	M	Q	K	I	T	H	E	E	T	H	S	R	N	L	I	I	P	A	R	L	I	A	A
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		L	E	R	N	V	T	C	L	K	E	G	T	V	S	F	L	I	A	Q	Q	P	E	L	Q	G	F	N	S	I	K	T	L	C	D	H	L	I	F	R	K	E	V	A	C	T	N	Y	X	P	I	D	L	L	T	K
Template Known Secondary structure												T	S																									T	S						S											T
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions