Job Description P18811 Confidence 99.93% Date Thu Jan 5 11:37:10 GMT 2012 Rank 55 Aligned Residues 267 % Identity 15% Template c2vk2A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein Resolution 1.20 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		V	I	G	L	I	V	R	D	L	S	A	P	F	Y	A	E	L	T	A	G	L	T	E	A	L	E	A	Q	G	R	M	V	F	L	L	H	G	G	K	D	G	E	Q	L	A	Q	R	F	S	L	L	L	N	Q	G	V	D	G	V	V	I	A	G	A	A	G	S	S	D	D	.	L	R	R	M	A	E	E	K	A
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence		T	V	G	F	S	Q	V	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L	K	E	A	K	D	A	E
Template Known Secondary structure												S																		T									T	T																T		S							S	S	S	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		145	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.																											.	.	.
Query SS confidence								.	.	.	.																											.	.	.
Query Sequence		I	P	V	I	F	A	.	.	.	.	S	R	A	S	Y	L	D	D	V	D	T	V	R	P	D	N	M	Q	A	A	Q	L	L	T	E	H	.	.	.	L	I	R	N	G	H	Q	R	I	A	W	L	G	G	Q	S	S	S	L	T	R	A	E	R	V	G	G	Y	C	A	T	L	L	K	F	G	L	P	F	H	S
Query Conservation								.	.	.	.																											.	.	.
Alig confidence								.	.	.	.																											.	.	.
Template Conservation
Template Sequence		I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A	P	N	I	K	I	I
Template Known Secondary structure								S	S					S		G	G	G	S	S																							T	T	S										S	T	T															T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.
Predicted Secondary structure																										.	.																																																			.	.
Query SS confidence																										.	.																																																			.	.
Query Sequence		D	W	V	L	E	C	T	S	S	Q	K	Q	A	A	E	A	I	T	A	L	L	R	H	N	.	.	P	T	I	S	A	V	V	C	Y	N	E	T	I	A	M	G	A	W	F	G	L	L	K	A	G	R	Q	S	G	E	S	G	V	D	R	Y	F	E	Q	Q	V	S	L	A	A	F	T	D	A	T	.	.	P	T
Query Conservation																										.	.																																																			.	.
Alig confidence																										.	.																												.	.	.	.	.	.	.	.	.															.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.
Template Sequence		R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	.	.	.	.	.	.	.	.	.	P	G	K	D	I	L	T	G	S	I	D	G	V	P	D	I	Y	K
Template Known Secondary structure							T	T																T	T	T	T	T	T							S	S														T	T			.	.	.	.	.	.	.	.	.	B	T	T	T	B
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.										.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	D	D	I	P	V	T	W	A	S	T	P	A	R	E	L	G	I	T	L	A	D	R	M	M	Q	K	I	T	H	E	E	T	H	S	R	N	L	I	I	P	A	R	L	I	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	M	D	G	E	A	N	A	S	V	E	L	T	P	N	M	A	G	P	A	F	D	A	L	E	K	Y	K	K	D	G	T	M	P	E	K	L	T	L	T	K	S	T	L	Y	L	P
Template Known Secondary structure					T	T										S																						S											G
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions