Job Description P18811 Confidence 99.90% Date Thu Jan 5 11:37:10 GMT 2012 Rank 62 Aligned Residues 262 % Identity 14% Template c2qvcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.
Predicted Secondary structure																																					.																																				.
Query SS confidence																																					.																																				.
Query Sequence		V	I	G	L	I	V	R	D	L	S	A	P	F	Y	A	E	L	T	A	G	L	T	E	A	L	E	A	Q	G	R	M	V	F	L	L	.	H	G	G	K	D	G	E	Q	L	A	Q	R	F	S	L	L	L	N	Q	G	V	D	G	V	V	I	A	G	A	A	G	S	S	D	D	.	L	R	R	M	A	E	E	K
Query Conservation																																					.																																				.
Alig confidence							.																														.																																				.
Template Conservation							.
Template Sequence		T	I	G	V	I	.	G	K	S	V	H	P	Y	W	S	Q	V	E	Q	G	V	K	A	A	G	K	A	L	G	V	D	T	K	F	F	V	P	Q	K	E	D	I	N	A	Q	L	Q	X	L	E	S	F	I	A	E	G	V	N	G	I	A	I	A	P	S	D	P	T	A	V	I	P	T	I	K	K	A	L	E	X
Template Known Secondary structure							.		S		S	S																		T									S	S																T	T		S							S	S	T	T	T	T										T
Template Predicted Secondary structure							.
Template SS confidence
		33	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		A	I	P	V	I	F	A	S	R	A	S	Y	L	D	D	V	D	T	V	R	P	D	N	M	Q	A	A	Q	L	L	T	E	H	L	I	R	N	.	.	.	G	H	Q	R	I	A	W	L	G	G	Q	S	S	S	L	T	R	A	E	R	V	G	G	Y	C	A	T	L	L	K	F	G	L	P	F	H	S	D	W	V
Query Conservation																																							.	.	.
Alig confidence																																							.	.	.																																		.	.
Template Conservation																																																																											.	.
Template Sequence		G	I	P	V	V	T	L	D	T	D	S	P	D	S	G	R	Y	V	Y	I	G	T	D	N	Y	Q	A	G	Y	T	A	G	L	I	X	K	E	L	L	G	G	K	G	K	V	V	I	G	T	G	S	L	T	A	X	N	S	L	Q	R	I	Q	G	F	K	D	A	I	K	D	S	E	I	.	.	E	I	V	D	I
Template Known Secondary structure		T							S	S			T	T	S			S																						T	T	T									S		S	S	S													T	T	T	T	S			.	.
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	E	C	T	S	S	Q	K	Q	A	A	E	A	I	T	A	L	L	R	H	N	P	T	I	S	A	V	V	C	Y	N	E	T	I	A	M	G	A	W	F	G	L	L	K	A	G	R	Q	S	G	E	S	G	V	D	R	Y	F	E	Q	Q	V	S	L	A	A	F	T	D	A	T	P	T	T	L	D	D	I	P	.
Query Conservation																																																																																	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	D	E	E	D	G	A	R	A	V	S	L	A	E	A	A	L	N	A	H	P	D	L	D	A	F	F	G	V	Y	A	Y	N	G	P	A	Q	A	L	V	V	K	N	A	G	K	.	.	.	.	.	.	.	.	.	.	.	V	G	K	V	K	I	V	C	F	D	T	T	P	D	I	L	Q	Y	V	K	E	G
Template Known Secondary structure					T	T																	T	T							S	S	T	T												T	T		.	.	.	.	.	.	.	.	.	.	.	T	T	T	S																	T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.												.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.															.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	V	T	W	A	S	T	P	A	R	E	L	G	I	T	L	A	D	R	M	M	Q	K	I	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	T	H	S	R	N	L	I	I	P	A	R	L	I	A	A
Query Conservation		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	Q	A	T	X	G	Q	R	P	Y	X	X	G	Y	L	S	V	T	V	L	Y	L	X	N	K	I	G	V	Q	N	T	L	X	X	L	P	K	V	K	V	D	G	K	V	D	Y	V	I	D	T	G	V	D	V	V	T	P
Template Known Secondary structure		S																										T								T	S						T	T															T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions