Job Description P77581 Confidence 100.00% Date Thu Jan 5 12:30:46 GMT 2012 Rank 41 Aligned Residues 361 % Identity 17% Template d2bwna1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.1

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.																								.
Query SS confidence																													.	.	.	.	.	.																								.
Query Sequence		T	R	E	N	F	D	E	W	M	I	P	V	Y	A	P	A	P	F	I	P	V	R	G	E	G	S	R	.	.	.	.	.	.	L	W	D	Q	Q	G	K	E	Y	I	D	F	A	G	G	I	A	V	N	A	L	G	H	.	A	H	P	E	L	R	E	A	L	N	E	Q	A	S	K	F	W	H	T	G	N	G	Y
Query Conservation																													.	.	.	.	.	.																								.
Alig confidence																													.	.	.	.	.	.															.	.	.							.
Template Conservation																																																	.	.	.
Template Sequence		L	D	K	A	I	Q	K	L	H	D	E	G	R	Y	R	T	F	I	D	I	E	R	E	K	G	A	F	P	K	A	Q	W	N	R	P	D	G	G	K	Q	D	I	T	V	W	C	G	.	.	.	N	D	Y	L	G	M	G	Q	H	P	V	V	L	A	A	M	H	E	A	L	E	A	V	G	A	G	S	G	G	T
Template Known Secondary structure												T	T												T	T	S	T	T							T	T	S									S		.	.	.	S		T	T	S	G	G	G																	S				S	B
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
							79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	T	N	E	P	V	L	R	L	A	K	K	L	I	D	A	T	F	A	D	R	V	F	F	C	N	S	G	A	E	A	N	E	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																										.	.	.	.	.	.	.																											.
Template Conservation																																																.	.	.	.	.	.	.																											.
Template Sequence		R	N	I	S	G	T	T	A	Y	H	R	R	L	E	A	E	I	A	G	L	H	Q	K	E	A	A	L	V	F	S	S	A	Y	N	A	N	D	A	T	L	S	T	L	R	V	L	.	.	.	.	.	.	.	F	P	G	L	I	I	Y	S	D	S	L	N	H	A	S	M	I	E	G	I	K	R	N	A	G	P	.
Template Known Secondary structure		T	T	T	B																	T	T		S						S																	.	.	.	.	.	.	.	S	T	T							T	T												S				.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.																											.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.
Predicted Secondary structure																													.	.	.	.																																																.
Query SS confidence																													.	.	.	.																																																.
Query Sequence		Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	.	.	.	.	D	D	S	T	C	A	V	I	V	E	P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E	L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	.	G
Query Conservation																													.	.	.	.																																																.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.																						.	.	.	.																							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	K	R	I	F	R	H	N	D	V	A	H	L	R	E	L	I	A	A	D	D	P	A	A	P	K	L	I	A	F	E	S	V	Y	S	M	D	G	D	F	G	P	.	.	.	.	I	K	E	I	C	D	I	A	E	E	F	G	A	L	T	Y	I	D	E	V	H	A	V	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.						T	T												S		T	T	S								S	B		T	T	T			B			.	.	.	.												T								T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template SS confidence
													156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																													.																									.	.
Query SS confidence																													.																									.	.
Query Sequence		V	G	R	T	G	E	L	Y	A	Y	M	H	Y	G	V	T	P	D	L	L	T	T	A	K	A	L	G	.	G	G	F	P	V	G	A	L	L	A	T	E	E	C	A	R	V	M	T	V	G	T	H	G	.	.	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	P	E	M	L
Query Conservation																													.																									.	.
Alig confidence																													.																									.	.
Template Conservation
Template Sequence		M	Y	G	P	R	G	A	G	V	A	E	R	D	G	L	M	H	R	I	D	I	F	N	G	T	L	A	A	Y	G	V	F	G	G	Y	I	A	A	S	A	R	M	V	D	A	V	R	S	Y	A	P	G	F	I	F	S	T	S	L	P	P	A	I	A	A	G	A	Q	A	S	I	A	F	L	K	T	A	E	G	Q
Template Known Secondary structure		T	S	S	T	T	S								T		G	G	G		S											S																								T	S	B																		T	S
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.								.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.												.	.	.	.	.	.	.
Query SS confidence																																																						.												.	.	.	.	.	.	.
Query Sequence		N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I	N	H	R	Y	G	L	F	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N	A	D	Y	A	G	Q	A	K	Q	I	S	Q	E	.	A	A	K	A	G	V	M	V	L	I	A	.	.	.	.	.	.	.	G	G	N	V	V	R	F	A	P
Query Conservation																																																						.												.	.	.	.	.	.	.
Alig confidence																										.	.													.	.													.												.	.	.	.	.	.	.
Template Conservation																										.	.													.	.
Template Sequence		K	L	R	D	A	Q	Q	M	H	A	K	V	L	K	M	R	L	K	A	L	G	M	P	I	.	.	I	D	H	G	S	H	I	V	P	V	V	I	.	.	G	D	P	V	H	T	K	A	V	S	D	M	L	L	S	D	Y	G	V	Y	V	Q	P	I	N	F	P	T	V	P	R	G	T	E	R	L	R	F	T	P
Template Known Secondary structure																						T			B	.	.				S	S	S							.	.																										T	T	T	S		T	T
Template Predicted Secondary structure																										.	.													.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	V	S	E	E	E	V	T	T	G	L	D	R	F	A	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	V	H	D	L	K	Q	I	D	G	L	V	H	A	M	D	L	L
Template Known Secondary structure			T	T	S
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions