Phyre 2 alignment of P77581 with d1gdea

Job Description P77581
Confidence 99.96% Date Thu Jan 5 12:30:46 GMT 2012

Rank 98 Aligned Residues 342

% Identity 15% Template d1gdea_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																		.	.																												.	.	.	.	.
Query SS confidence																																		.	.																												.	.	.	.	.
Query Sequence	G	K	E	Y	I	D	F	A	G	G	I	A	V	N	A	L	G	H	A	H	P	E	L	R	E	A	L	N	E	Q	A	S	K	.	.	F	W	H	T	G	N	G	Y	T	N	E	P	V	L	R	L	A	K	K	L	I	D	A	T	F	A	D	.	.	.	.	.	R	V	F	F	C	N	S	G	A	E	A	N	E
Query Conservation																																		.	.																												.	.	.	.	.
Alig confidence											.	.							.															.	.																												.	.	.	.	.
Template Conservation											.	.							.
Template Sequence	M	K	D	V	I	S	L	G	I	G	.	.	E	P	D	F	D	T	.	P	Q	H	I	K	E	Y	A	K	E	A	L	D	K	G	L	T	H	Y	G	P	N	I	G	L	L	E	L	R	E	A	I	A	E	K	L	K	K	Q	N	G	I	E	A	D	P	K	T	E	I	M	V	L	L	G	A	N	Q	A	F	L
Template Known Secondary structure		T	T								.	.	S			S			.														T	T			S				T	T																							T	T	T	S					S	S	T	T
Template Predicted Secondary structure											.	.							.
Template SS confidence
	25	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.

	111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	D	S	T	C	A	V	I	V	E
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template Sequence	M	G	L	.	.	.	.	.	.	.	.	.	S	A	F	L	K	D	G	E	E	V	L	I	P	T	P	A	F	V	S	Y	A	P	A	V	I	L	A	G	G	K	P	V	E	V	P	T	Y	E	.	.	.	.	.	E	D	E	F	R	L	N	V	D	E	L	K	K	Y	V	T	D	K	T	R	A	L	I	I	N
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	T	T	T			T	T								S			T	T									T										G	.	.	.	.	.	G	G	T	T													T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template SS confidence
	102	.	.										.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.						.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.										.
Query SS confidence																																																									.	.	.	.	.										.
Query Sequence	P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E	L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	A	Y	M	H	Y	G	V	T	P	D	.	.	.	.	.	L	L	T	T	A	K	A	L	G	.	G	G	F	P	V	G	A	L	L
Query Conservation																																																									.	.	.	.	.										.
Alig confidence								.																																																	.	.	.	.	.										.
Template Conservation								.
Template Sequence	S	P	C	N	P	T	G	.	A	V	L	T	K	K	D	L	E	E	I	A	D	F	V	V	E	H	D	L	I	V	I	S	D	E	V	Y	E	H	F	I	Y	D	D	A	R	H	Y	S	I	A	S	L	D	G	M	F	E	R	T	I	T	V	N	G	F	S	K	T	F	A	M	T	G	W	R	L	G	F	V	A
Template Known Secondary structure	S	S		T	T	T		.																		T	T								T	T	T	T		B		T	T						G	G	G	S	T	T		G	G	G							S	T	T	T	T	T		G	G	G
Template Predicted Secondary structure								.
Template SS confidence
	168	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	T	E	E	C	A	R	V	M	T	V	G	T	H	G	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I	N	H	R	Y	G	L	F	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	P	S	W	I	I	E	R	M	V	K	F	Q	M	Y	N	A	T	C	P	V	T	F	I	Q	Y	A	A	A	K	A	L	K	D	E	R	S	W	K	A	V	E	E	M	R	K	E	Y	D	R	R	R	K	L	V	W	K	R	L	N	E	M	G	L	P	T	V	K	P	K	G	A	F	Y	I	F	P	R	I	R
Template Known Secondary structure															T	T	T		S														T																													T	T								B	T	T					B		G
Template Predicted Secondary structure
Template SS confidence
	247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

	345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.							.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence	A	D	Y	A	G	Q	A	K	Q	I	S	Q	E	A	A	K	A	G	V	M	V	L	I	A	.	.	.	.	.	.	G	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E	V	T	T	G	L	D	R	F	A	A	A	C	E	H
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.								.	.
Template Conservation																																						.	.
Template Sequence	D	T	G	L	T	S	K	K	F	S	E	L	M	L	K	E	A	R	V	A	V	V	P	G	S	A	F	G	K	A	G	E	G	Y	V	R	I	.	.	S	Y	A	T	A	Y	E	K	L	E	E	A	M	D	R	M	E	R	V	L	K	E
Template Known Secondary structure	G	G	T														T							G	G	G	G		G	G	G	T	T	B				.	.				S
Template Predicted Secondary structure																																						.	.
Template SS confidence
	327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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