Job Description P77581 Confidence 99.92% Date Thu Jan 5 12:30:46 GMT 2012 Rank 179 Aligned Residues 347 % Identity 14% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		37	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																	.	.															.	.																												.	.	.
Query SS confidence						.																	.	.															.	.																												.	.	.
Query Sequence		Q	G	K	E	.	Y	I	D	F	A	G	G	I	A	V	N	A	L	G	H	A	.	.	H	P	E	L	R	E	A	L	N	E	Q	A	S	K	.	.	F	W	H	T	G	N	G	Y	T	N	E	P	V	L	R	L	A	K	K	L	I	D	A	T	F	A	D	.	.	.	R	V	F	F	C	N	S	G	A	E	A
Query Conservation						.																	.	.															.	.																												.	.	.
Alig confidence						.																	.	.															.	.																												.	.	.
Template Conservation
Template Sequence		N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	E	H	V	G	Y	A	P	I	A	G	I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T	G	G
Template Known Secondary structure				G	G	G						S	S			B		T	T	S		B												T								S				T	T															G	G	G			S	S								S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	D	S	T	C	A	V	I
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.
Template Sequence		I	H	H	L	I	H	N	Y	.	.	.	.	.	.	.	.	.	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	H	N	N	F	N	H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	S		T	T							S	S			T									T	T								S	B		T	T	S	S	B																	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.										120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.									.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		V	E	P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E	L	C	N	.	.	.	.	.	.	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	A	Y	M	H	Y	G	V	T	.	.	.	.	.	.	.	.	P	D	L	L	T	T	A	K	A	L
Query Conservation																												.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence											.																	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		N	T	P	G	N	N	P	T	G	.	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F
Template Known Secondary structure				S	S		T	T	T		.																					T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T			T	T									S	T	T	T	T
Template Predicted Secondary structure											.
Template SS confidence
		183	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		255		.	.	.	.	260	.	.	.	.	.	.								.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.					.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure			.												.	.	.	.	.	.	.																																				.	.	.	.
Query SS confidence			.												.	.	.	.	.	.	.																																				.	.	.	.
Query Sequence		G	.	G	G	F	P	V	G	A	L	L	A	T	.	.	.	.	.	.	.	E	E	C	A	R	V	M	T	V	G	T	H	G	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	.	.	.	.	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I
Query Conservation			.												.	.	.	.	.	.	.																																				.	.	.	.
Alig confidence			.												.	.	.	.	.	.	.																																				.	.	.	.
Template Conservation
Template Sequence		T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D	I	F	K	Q	E
Template Known Secondary structure		T			S	S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	R	Y	G	L	F	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N	A	D	Y	A	G	Q	A	K	Q	I	S	Q	E	A	A	K	A	G	V	M	V	L	I	A	G	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E	V	T	T	G	L	D	R	F	A	A	A	C	E	H	F
Query Conservation
Alig confidence																								.	.	.	.	.																			.											.
Template Conservation																								.	.	.	.	.																			.											.
Template Sequence		A	A	Q	V	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	.	.	.	.	.	S	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	.	L	A	N	G	I	R	I	A	A	C	.	G	I	P	K	C	Q	X	T	G	L	A	E	K	I	Y	N	A	X	K	S	L
Template Known Secondary structure						T								S	S	S							T	.	.	.	.	.	T											T	T						.		S	S						G	G	.	G	S						T	T												T
Template Predicted Secondary structure																								.	.	.	.	.																			.											.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.						.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions