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Job DescriptionP77581
Confidence100.00%DateThu Jan 5 12:30:46 GMT 2012
Rank12Aligned Residues387
% Identity35%Templatec3oksB_
PDB info PDB header:transferaseChain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10....... ..20.........30.........40.........50.........60.........70........ .80..
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Query Sequence  ITRENFDEWMIPV. YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGY. TNEP
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Template Sequence  ALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEG
Template Known Secondary structure  S
TTS

SSSS
TTTTS
SST
TT
TT
TT
S

TTTTS

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Query Sequence  VLRLAKKLIDAT. . . FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPA. YSQDF
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Template Sequence  YVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH. . . . . . THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGF
Template Known Secondary structure  SS

SSSS......


TT



SS



TTTTTT
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   102.......110.........120.........130.........140. ........150.........160.........170.....
 
   159160.........170.. ....... 180.........190.........200.........210.....
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Query Sequence  APLPADIRHAAYND. . . . . . . . . . . . . . . . . . . . . . INSASAL. IDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNR
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Template Sequence  GPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRK
Template Known Secondary structure 
S

SS



GGG
T
T
GGG
SSBTTTT
B


TT
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   176...180.........190.........200.........210.........220.........230.........240.........250.....
 
   216...220.........230.........240.........250.........260.........270.........280.........290.....
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Query Sequence  HNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKV
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Template Sequence  NDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAG. IAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALAT
Template Known Secondary structure  TT

TTTTTTTTSSSSGGGTTT


S

.TTTTSS
T
S
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Query Sequence  LELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNAD. . . . . YAGQAKQISQEAAKAGVMVLIAG.
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Template Sequence  IETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGT
Template Known Secondary structure  TT
TTTTBSTTS

B
TT

T
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   336...340.........350.........360.........370.........380.........390.........400.........410.....
 
   370.........380.........390........
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Query Sequence  . GNVVRFAPALNVSEEEVTTGLDRFAAACE
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Template Sequence  YGNVVRFLPPLSIGDDLLNEGLDVLEEVLR
Template Known Secondary structure  TS



TT

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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