Job Description P77581 Confidence 99.92% Date Thu Jan 5 12:30:46 GMT 2012 Rank 169 Aligned Residues 341 % Identity 11% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.											.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																										.													.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.																										.													.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	F	A	G	G	I	A	V	N	A	L	G	H	A	H	.	.	P	E	L	R	E	A	L	N	E	Q	A	S	K	F	W	H	T	G	N	G	Y	T	N	E	P	.	V	L	R	L	A	K	K	L	I	D	A	T	.	.	.	.	.	.	.	.	.	.	F	A	D	R	V	F	F	C	N	S	G	A	E	A
Query Conservation																		.	.																										.													.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																										.													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	L	G	V	G	A	Y	R	D	E	S	G	K	P	W	I	L	P	A	V	K	E	A	E	A	I	I	S	S	D	L	S	K	Y	N	K	E	Y	P	P	V	A	G	F	P	L	F	L	E	A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	G	R	I	A	S	C	Q	S	L	S	G	T	G	S
Template Known Secondary structure					S	S						T	T	S																	S		T	T	T	S			S				T	T																T	T						T	T								S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		N	E	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	.	.	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	D	S	T	C	A
Query Conservation																																																							.	.
Alig confidence													.	.	.	.	.	.																																					.	.
Template Conservation													.	.	.	.	.	.
Template Sequence		L	H	I	G	F	E	F	L	H	L	W	.	.	.	.	.	.	M	P	K	A	E	F	Y	M	P	S	T	T	W	P	N	H	Y	G	I	Y	D	K	V	F	N	K	L	K	V	P	Y	K	E	Y	T	Y	L	R	K	D	G	E	L	E	I	D	F	S	N	T	K	K	D	I	Q	S	A	P	E	K	S	I	F
Template Known Secondary structure													.	.	.	.	.	.		T	T							S	S			T												T	T	T	S								B		T	T	S		S	S	B												S		T	T
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.								.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.
Query Sequence		V	I	V	E	P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E	L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	A	.	.	.	.	.	.	.	Y	M	H	Y	G	V	T	P	D	L	L	T	T	A	K	A	L	G	G	G	F	P
Query Conservation																																																					.	.	.	.	.	.	.
Alig confidence													.																																								.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		L	F	H	A	C	A	H	N	P	S	G	.	I	D	F	T	E	A	Q	W	K	E	L	L	P	I	M	K	E	K	K	H	I	A	F	F	D	S	A	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A	V	R	M	F	V	D	A	G	V	E	V	L	V	A	Q	S	F	S	K	N	F	G	L	Y	G	E
Template Known Secondary structure					S	S	S		T	T	T		.																			T								S		T	T	T	S	S	S						T										T										T	T	T	S			G	G	G
Template Predicted Secondary structure													.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		260	.	.	.	.	.																	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.					.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Query Sequence		V	G	A	L	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	E	C	A	R	V	M	T	V	G	T	H	G	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	.	.	.	.	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation
Template Sequence		R	I	G	C	L	H	V	V	H	A	G	V	E	G	S	V	E	K	N	K	A	L	S	A	A	M	V	S	G	M	T	L	Q	I	R	K	T	W	S	M	S	A	I	H	G	A	Y	I	V	Q	V	I	V	H	D	K	R	L	L	Q	M	F	Y	D	N	V	K	E	M	S	A	R	I	H	R	M	R	S	L	L
Template Known Secondary structure												S		S	S	S																					T	T	T	S	S														T	S
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		320	.	.	.	.	.	.	.	.	.										330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence		N	T	I	N	H	R	Y	G	L	F	.	.	.	.	.	.	.	.	.	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N	A	D	Y	A	G	Q	A	K	Q	I	S	Q	E	A	A	K	A	G	V	M	V	L	I	A	G	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E	V	T	T	G	L
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																						.	.	.							.
Template Conservation																																			.	.	.	.	.	.																						.	.	.							.
Template Sequence		H	A	S	L	A	K	R	K	T	P	G	P	G	S	K	G	T	W	D	H	I	L	T	A	I	G	M	F	T	F	T	G	L	.	.	.	.	.	.	T	P	E	H	V	D	Y	L	K	E	K	W	S	I	Y	L	V	K	A	G	G	.	.	.	R	M	S	M	C	G	.	L	T	E	S	N	C	D	Y	V	A
Template Known Secondary structure								T	T				S	T	T	T	T			T							S	S							.	.	.	.	.	.																	B	T	G	G	G	.	.	.				G	G	G	.			T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.																						.	.	.							.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.							.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.				.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.
		391	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	F	A	A	A	C	E	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	I	H	D	A	V	T	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions