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Job DescriptionP77581
Confidence99.97%DateThu Jan 5 12:30:46 GMT 2012
Rank57Aligned Residues347
% Identity16%Templatec3mafB_
PDB info PDB header:lyaseChain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form)
Resolution2.97 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70......... 80.........90......... 100.......
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Query Sequence  EYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYT. . . . . . NEPVLRLAKKLIDATFADRV. . . . . . FFCNSGAE
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Template Sequence  EILAEIAAMGAGAV. . YDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTE
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TT

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   7980.........90.. .......100.........110.........120.........130.........140.........150......
 
   108.110.........120.........130.........140.........150.........160.........170.........180.......
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Query Sequence  ANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAV
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Template Sequence  SLLLAMKTYRDWARATKGITAPEAVVPVS. AHAAFDKAAQYFGIKLVRTPLDA. . . . . . . DYRADVAAMREAITPNTVVV
Template Known Secondary structure 

SS
TT.S
TT

B
T.......TSSB


TT
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   171........180.........190......... 200.........210.........220.. .......230.........240..
 
   188.190.........200.........210.........220......... 230.........240.........250.........
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Query Sequence  IVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGV. . . . . . . . GRTGELYAYMHYGVTPDLLTTAKALGGGFP
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Template Sequence  AGSAPGYPHGVVDP. . . . IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKG
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TTT




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   243......250...... ...260.........270.........280.........290.........300.........310........
 
   260.........270.........280..... ....290.........300.........310.........320.........
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Query Sequence  VGALLATEECARVMTVGTHGTTYGGN. . . . . . . . . . PLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLF
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Template Sequence  TSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSL
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SS
SS
TT

SSS
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   319320.........330.........340.........350.........360.........370.........380.........390........
 
   330.........340.........350.........360......... 370...... ...380.........390.........400...
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Query Sequence  SEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAG. GNVVRFA. PALNVSEEEVTTGLDRFAAACEHFVSR
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Template Sequence  KILGDPLWVIAVAS. . . DELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH
Template Known Secondary structure  SS

SS
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GGGSSTTT
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   399400.........410.. .......420.........430.........440.........450.........460.........470.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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