Job Description P77581 Confidence 99.74% Date Thu Jan 5 12:30:46 GMT 2012 Rank 228 Aligned Residues 325 % Identity 12% Template c3m5uA_ PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni Resolution 2.15 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80										.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		K	E	Y	I	D	F	A	G	G	I	A	V	N	A	L	G	H	A	H	P	E	L	R	E	A	L	N	E	Q	A	S	K	F	W	H	T	G	N	G	Y	T	N	.	.	.	.	.	.	.	.	.	E	P	V	L	R	L	A	K	K	L	I	D	A	T	F	A	D	.	.	.	R	V	F	F	C	N	S	G	A
Query Conservation																																												.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence											.	.					.	.	.																									.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation											.	.					.	.	.
Template Sequence		X	R	K	I	N	F	S	A	G	.	.	P	S	T	L	.	.	.	P	L	E	I	L	E	Q	A	Q	K	E	L	C	D	Y	Q	G	R	G	Y	S	I	X	E	I	S	H	R	T	K	V	F	E	E	V	H	F	G	A	Q	E	K	A	K	K	L	Y	E	L	N	D	D	Y	E	V	L	F	L	Q	G	G	A
Template Known Secondary structure									S	S	.	.	S				.	.	.											T	S	S	S	G	G	G	S	S	S		G	G	G	S		S	S	S																			T			T	T							S	S
Template Predicted Secondary structure											.	.					.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.			10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	N	E	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	D	S	T	C	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Sequence		S	L	Q	F	A	X	I	P	X	N	L	A	.	.	.	.	.	.	.	.	L	N	G	V	C	E	Y	A	N	T	G	V	W	T	K	K	A	I	K	E	A	Q	I	L	G	V	N	V	K	T	V	A	S	S	E	E	S	N	F	D	H	I	P	.	.	.	.	.	.	.	R	V	E	F	S	D	N	A	D	Y
Template Known Secondary structure														.	.	.	.	.	.	.	.		S	S								S													T	T										T	T	T	T	S		S			.	.	.	.	.	.	.						T	T	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.									.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	V	E	P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E	L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	A	Y	M	H	Y	G	V	T	P	D	L	L	T	T	A	K	A	L	G	G	G	F	P	V	G	A	L	L	A	T
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.																	.	.	.															.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.																	.	.	.															.	.	.
Template Sequence		A	Y	I	C	S	N	N	T	I	Y	G	T	Q	Y	Q	.	.	.	.	.	.	.	.	.	.	N	Y	P	K	T	K	T	P	L	I	V	D	A	S	S	D	.	.	.	F	F	S	R	K	V	D	F	S	N	I	A	L	F	.	.	.	Y	G	G	V	Q	K	N	A	G	I	S	G	L	S	C	I	F	I	R
Template Known Secondary structure						S			T	T	T	T				S	.	.	.	.	.	.	.	.	.	.	S					S	S							G	G	G	.	.	.	T	T	S	S					T	T					.	.	.				T	T	T	T	S	S		T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																	.	.	.															.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.											.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.														.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.						.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Query Sequence		E	E	C	A	R	V	M	T	V	G	T	H	G	T	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I	N	H	R	Y	G	.	.	.	.	.	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Conservation
Template Sequence		K	D	X	L	E	R	S	K	N	K	Q	I	P	S	X	L	N	Y	L	T	H	A	E	N	Q	S	L	F	N	T	P	P	T	F	A	I	Y	X	F	N	L	E	X	D	W	L	L	N	Q	G	G	L	D	K	V	H	E	K	N	S	Q	K	A	T	X	L	Y	E	C	I	D	L	S	N	G	F	Y	K	G	H
Template Known Secondary structure										T					G	G	G								T	T	T		S	S																			T	T	T																						T	S	T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.			370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		F	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N	A	D	Y	A	G	Q	A	K	Q	I	S	Q	E	A	A	K	A	G	V	M	V	L	I	A	G	.	.	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E	V	T	T	G	L	D	R	F	A	A	A	C	E	H	F
Query Conservation																																											.	.
Alig confidence																									.																		.	.
Template Conservation																									.
Template Sequence		A	D	K	K	D	R	S	L	X	N	V	S	F	N	I	A	K	N	K	D	L	E	P	.	L	F	V	K	E	A	E	E	A	G	X	I	G	L	K	G	H	R	I	L	G	G	I	R	A	S	I	Y	N	A	L	N	L	D	Q	V	K	T	L	C	E	F	X	K	E	F	Q	G	K	Y
Template Known Secondary structure		S		G	G	G	B		S	S							S	S		T	T				.									T	T					B			T	T	T		S							T	T	S
Template Predicted Secondary structure																									.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions