Job Description P77581 Confidence 99.94% Date Thu Jan 5 12:30:46 GMT 2012 Rank 142 Aligned Residues 336 % Identity 14% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																		.	.														.	.	.																												.	.	.	.	.	.
Query SS confidence																		.	.														.	.	.																												.	.	.	.	.	.
Query Sequence		I	D	F	A	G	G	I	A	V	N	A	L	G	H	A	H	.	.	P	E	L	R	E	A	L	N	E	Q	A	S	K	.	.	.	F	W	H	T	G	N	G	Y	T	N	E	P	V	L	R	L	A	K	K	L	I	D	A	T	F	A	D	.	.	.	.	.	.	R	V	F	F	C	N	S	G	A	E	A	N	E
Query Conservation																		.	.														.	.	.																												.	.	.	.	.	.
Alig confidence																		.	.														.	.	.																												.	.	.	.	.	.
Template Conservation
Template Sequence		I	N	L	S	I	G	V	C	C	N	D	D	G	D	L	H	I	F	D	S	V	L	N	A	D	K	L	V	T	E	N	Y	K	E	K	P	Y	L	L	G	N	G	T	E	D	F	S	T	L	T	Q	N	L	I	F	G	N	N	S	K	Y	I	E	D	K	K	I	C	T	I	Q	C	I	G	G	T	G	A	I	F
Template Known Secondary structure					S		S	S		B		T	T	S	S	B																								T	T	S	S															S	S		T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	D	S	T	C	A	V	I	V	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.														.																											.	.
Template Conservation										.	.	.	.	.	.	.														.																											.	.
Template Sequence		V	L	L	E	F	L	K	M	.	.	.	.	.	.	.	L	N	V	E	T	L	Y	V	T	N	P	P	Y	.	I	N	H	V	N	M	I	E	S	R	G	F	N	L	K	Y	I	N	F	F	D	Y	N	L	I	D	.	.	I	N	Y	D	L	F	L	N	D	L	R	N	I	P	N	G	S	S	V	I	L	Q	I
Template Known Secondary structure									T	.	.	.	.	.	.	.	T	T								S	S			.									T	T	T											T	T	T	T		.	.													S		S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.														.																											.	.
Template SS confidence
		112	.	.	.	.	.	.	.								120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.								.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.																				.
Query SS confidence																																																.	.	.	.	.	.	.																				.
Query Sequence		P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E	L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	.	.	.	.	.	.	.	A	Y	M	H	Y	G	V	T	P	D	L	L	T	T	A	K	A	L	G	.	G	G	F	P	V	G	A
Query Conservation																																																.	.	.	.	.	.	.																				.
Alig confidence									.																																							.	.	.	.	.	.	.																				.
Template Conservation									.
Template Sequence		S	C	Y	N	P	C	S	.	V	N	I	E	E	K	Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I	I	F	D	I	A	Y	Q	G	F	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N	I	A	F	S	V	C	Q	S	F	S	K	N	M	S	L	Y	G	E	R	A	G	A
Template Known Secondary structure		S	S		T	T	T		.																											S		T	T	T	S	S	S	S	T	T	G	G	G								T	T	T										T	T	T	S			T	T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		182	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		263	.	.	.								.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.									.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query Sequence		L	L	A	T	.	.	.	.	.	.	.	E	E	C	A	R	V	M	T	V	G	T	H	G	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	.	.	.	.	.	.	.	.	L	I	N	T	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I	N	H	R	Y	G
Query Conservation						.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	H	I	V	C	K	N	Q	E	E	K	K	I	V	F	N	N	L	C	F	I	V	R	K	F	Y	S	S	P	V	I	H	T	N	R	I	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S	Q	R	I	T	N	N	R	I	L	F	F	N	K	L	E	T	Y	Q	K	K	Y	N
Template Known Secondary structure							S	S																	T	T	T	S	S																																																G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		328	.	330	.					.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		L	F	S	E	.	.	.	.	V	R	G	L	G	L	L	I	G	C	V	L	N	A	D	Y	A	G	Q	A	K	Q	I	S	Q	E	A	A	K	A	G	V	M	V	L	I	A	G	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E	V	T	T	G	L	D	R	F	A	A	A	C	E	H	F
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.															.	.	.	.	.	.	.																		.	.	.	.					.
Template Conservation																								.	.	.	.	.	.	.																		.	.	.	.					.
Template Sequence		L	N	Y	D	W	N	V	Y	K	K	Q	R	G	L	F	S	F	V	P	L	L	A	.	.	.	.	.	.	.	K	I	A	E	H	L	K	T	H	H	I	Y	I	I	N	N	G	.	.	.	.	R	I	N	V	.	S	G	I	T	K	N	N	V	D	Y	I	A	D	K	I	C	L	S	L	S	Q	I
Template Known Secondary structure						G	G	G	G	S	S			S	S					G	G	G	G	.	.	.	.	.	.	.	G	G	T	T	T	T	T	T	T	T					T	T	S	.	.	.	.				G	.	G	G			T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.																		.	.	.	.					.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.								.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions