Job Description P77581 Confidence 99.95% Date Thu Jan 5 12:30:46 GMT 2012 Rank 116 Aligned Residues 329 % Identity 12% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		E	A	L	N	E	Q	A	S	K	F	W	H	T	G	N	G	Y	T	N	E	P	V	L	R	L	A	K	K	L	I	D	A	.	.	.	.	.	T	F	A	D	R	V	F	F	C	N	S	G	A	E	A	N	E	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.																										.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		E	D	A	K	K	R	A	R	R	I	L	Q	A	C	S	Q	G	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	S	.	.	.	.	G	G	G	K	S	R	T	G	V	M	I	P	I	P
Template Known Secondary structure																		S																T	T	T					G	G	G					S	S															.	.	.	.			G	G	G	S								S
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	.	.	.	.	.	D	S	T	C	A	V	I	V	E	P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E
Query Conservation																																															.	.	.	.	.
Alig confidence																				.	.	.	.	.	.																						.	.	.	.	.																	.
Template Conservation																				.	.	.	.	.	.																																											.
Template Sequence		Q	Y	P	L	Y	S	A	V	I	S	E	L	D	A	I	Q	V	N	.	.	.	.	.	.	Y	Y	L	D	E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	.	Q	V	Q	S	R	K	C	I	E	D	V	I	H
Template Known Secondary structure				T									T	T						.	.	.	.	.	.				B	G	G	G	T	T	B														T	T	T	S									S	S		T	T	T		.
Template Predicted Secondary structure																				.	.	.	.	.	.																																											.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.														.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	A	Y	M	H	Y	G	V	T	P	D	L	L	T	T	A	K	A	L	G	.	.	G	G	F	P	V	G	A	L	L	A	T	E	E	C	A	R	V	M	T	V	G
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L
Template Known Secondary structure							T								T	T	T	T		B			T	T													T						T	T									S	S	S	S	T	T			S	S	S									S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
				277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.									300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure		.	.																								.	.	.	.	.	.	.	.
Query SS confidence		.	.																								.	.	.	.	.	.	.	.
Query Sequence		.	.	T	H	G	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	.	.	.	.	.	.	.	.	N	T	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I	N	H	R	Y	G	L	F	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N	A	D
Query Conservation		.	.																								.	.	.	.	.	.	.	.
Alig confidence		.	.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	L	L	S	V	R	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P	L	Q	G	A	M	Y	A	F	P	R	I	F	I
Template Known Secondary structure								S															T					T	T	S	T	T																												T	S	T	T								B	S	S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
		347	.	.												350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.								.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.													.								.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.													.								.	.	.	.	.	.	.
Query Sequence		Y	A	G	.	.	.	.	.	.	.	.	.	.	.	Q	A	K	Q	I	S	Q	E	A	A	K	A	.	G	V	M	V	L	I	A	.	.	.	.	.	.	.	G	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E	V	T	T	G	L	D	R	F	A	A	A	C	E	H	F	V	S	R
Query Conservation					.	.	.	.	.	.	.	.	.	.	.													.								.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.													.								.	.	.	.	.	.	.								.	.
Template Conservation																																																		.	.
Template Sequence		P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	T	Y	H	F	R	M	.	.	T	I	L	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F	H	I	N	F	L	E	K
Template Known Secondary structure												T	T	S																B					G	G	G	T				T	T			B				.	.				S
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.			.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions