Phyre 2 alignment of P77581 with c3hvyC

Job Description P77581
Confidence 99.80% Date Thu Jan 5 12:30:46 GMT 2012

Rank 220 Aligned Residues 291

% Identity 14% Template c3hvyC_

PDB info PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.					.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.																													.	.	.
Query SS confidence																			.	.	.	.																													.	.	.
Query Sequence	A	H	P	E	L	R	E	A	L	N	E	Q	A	S	K	F	W	H	.	.	.	.	T	G	N	G	Y	T	N	E	P	V	L	R	L	A	K	K	L	I	D	A	T	F	A	D	R	V	F	F	.	.	.	C	N	S	G	A	E	A	N	E	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K
Query Conservation																			.	.	.	.																													.	.	.
Alig confidence																			.	.	.	.																													.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.
Template Sequence	N	Q	L	K	V	L	K	A	F	Q	E	E	R	I	S	E	S	H	F	T	N	S	S	G	Y	G	Y	N	D	I	G	R	D	S	L	D	R	V	Y	A	N	I	F	N	T	E	S	A	F	V	R	P	H	F	V	N	G	T	H	A	I	G	A	A	L	F	G	.	.	.	.	.	.	.	.	.	N	L	R	P
Template Known Secondary structure												T	T			G	G	G	S					T	T		T	T																T		S						T	T		S	S												.	.	.	.	.	.	.	.	.	T			T
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
	44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110										.	.	.	.

	129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																												.	.	.	.										.	.
Query SS confidence																																												.	.	.	.										.	.
Query Sequence	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	.	.	.	.	D	I	N	S	A	S	A	L	I	.	.	D	D	S	T	C	A	V	I	V	E	P	I	Q	G	E	G	G	V	V	P	A	S
Query Conservation																																												.	.	.	.										.	.
Alig confidence																																												.	.	.	.										.	.
Template Conservation
Template Sequence	N	D	T	X	X	S	I	C	G	X	P	Y	D	T	L	H	D	I	I	G	X	D	D	S	K	K	V	G	S	L	R	E	Y	G	V	K	Y	K	X	V	D	L	K	D	G	K	V	D	I	N	T	V	K	E	E	L	K	K	D	D	S	I	K	L	I	H	I	Q	R	S	T	G	Y	G	W	R	K	S	L	R
Template Known Secondary structure	T						S	S	S	S			G	G	G					T			T	T			S			T	G	G	G	T									B	T	T	B														T	T								S	S			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.
Predicted Secondary structure																.	.																																									.	.																	.	.
Query SS confidence																.	.																																									.	.																	.	.
Query Sequence	N	A	F	L	Q	G	L	R	E	L	C	N	R	H	N	.	.	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	A	Y	M	H	Y	G	V	T	P	D	L	L	T	T	A	K	A	L	G	G	G	.	.	F	P	V	G	A	L	L	A	T	E	E	C	A	R	V	M	.	.	T	V	G
Query Conservation																.	.																																									.	.																	.	.
Alig confidence																.	.																					.	.	.																		.	.																	.	.
Template Conservation																																						.	.	.
Template Sequence	I	A	E	I	A	E	I	I	K	S	I	R	E	V	N	E	N	V	I	V	F	V	D	N	C	Y	G	E	F	V	E	E	K	E	P	T	D	.	.	.	V	G	A	D	I	I	A	G	S	L	I	K	N	I	G	G	G	I	A	T	T	G	G	Y	I	A	G	K	E	E	Y	V	T	Q	A	T	F	R	V	T
Template Known Secondary structure																S	S	S							T	T	T	T	T	T	S	S	S		G	G	G	.	.	.	G	T		S						T	T	S	G	G	G	T	T	T			S																			S
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

	277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	H	G	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I	N	H	R	Y	G	L	F	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N	A	D	Y	A	G	Q	A	K	Q	I	S	Q
Query Conservation
Alig confidence																																																																				.	.
Template Conservation																																																																				.	.
Template Sequence	V	P	G	I	G	G	E	C	G	S	T	F	G	V	X	R	S	L	Y	E	G	L	F	X	A	P	H	V	T	I	E	A	V	K	G	A	V	F	C	A	R	I	X	E	L	A	G	F	D	V	L	P	K	Y	N	D	K	R	T	D	I	I	Q	A	I	K	F	.	.	N	D	E	K	K	L	I	D	F	I	K
Template Known Secondary structure		T	T	T	G	G	G					T	T																																		T					S		T	T	S			S	S	S							.	.		S
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
	272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.			.	340	.	.	.	.	.	.	.	.	.

	357	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence	E	A	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	I	Q	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	350	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions