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Job DescriptionP77581
Confidence99.95%DateThu Jan 5 12:30:46 GMT 2012
Rank106Aligned Residues329
% Identity11%Templatec3ezsB_
PDB info PDB header:transferaseChain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution
Resolution2.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80 .........90... ......100.........110..
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Query Sequence  GKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTN. EPVLRLAKKLIDA. . . . TFADRVFFCNSGAEANEAA
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Template Sequence  KKRGLDLGIGEPQFET. . . PKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNF
Template Known Secondary structure  SS


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   21........30...... ...40.........50.........60.........70.........80.........90.......
 
   113......120.........130.........140.........150.........160.........170.........180.........190..
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Query Sequence  LKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVEPI
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Template Sequence  PSFVLF. . . . . . DYQNPTIAYPNPFYQIYEGAAKFIKAKSLLX. . . . . . . . . PLTKENDFTPSLNEKELQEVDLVILNSP
Template Known Secondary structure  TT......T
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   98.100... ......110.........120.........130.... .....140.........150.........160..
 
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Query Sequence  QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYM. . . . . . . . . HYGVTPDLLTTAKALG. GGFPVGA
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Template Sequence  NNPTG. RTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACXLAGNEAFKNVLVIHSLSKRSSAPGLRSGF
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   163.... ..170.........180.........190.........200.........210.........220.........230.........240.
 
   263......270.........280.........290.........300.........310.........320.........330.........340..
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Query Sequence  LLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCV
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Template Sequence  IAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWL. . . DDRHAEFFRNIYANNLKLARKIFKNT. . . . LIYPYSFYVYLP
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   242.......250.........260.........270...... ...280.........290.........300.. .......310....
 
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Query Sequence  LNADYAGQAKQISQEAAKAGVMVLIA. . . . . . . . GGNVVRFAPALNVSEEEVTTGLDRFAAACE
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Template Sequence  VQN. . . . GENFAKTLYQNEGIITLPALYLGRNRIGADYVRL. . ALVYDTPLLEKPLEIIETYRE
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   315.. ..320.........330.........340.........350. ........360.........370..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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