Return to main results Retrieve Phyre Job Id

Job DescriptionP77581
Confidence99.95%DateThu Jan 5 12:30:46 GMT 2012
Rank131Aligned Residues324
% Identity16%Templatec3bcxA_
PDB info PDB header:transferaseChain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70.........80.........90.........100.........110.........120.........130......
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  HPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKN
Query Conservation   
 
  
    
                 

  
        
    


 
   

  
              

    
Alig confidence 


















....
























































Template Conservation             
  
    ....
  
  

   
   
   

   


 

 


 
          
 


 

   
Template Sequence  GTKELQLMVEASLDGWLTT. . . . GRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVA
Template Known Secondary structure 
T

BS....
T
SS
TT
GGGGGGS

TT
S
Template Predicted Secondary structure 






....






















Template SS confidence 















































































   42.......50.........60 .........70.........80.........90.........100.........110.......
 
   137..140.........150.........160.........170.........180.........190.........200.........210......
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  AFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRH
Query Conservation    

    
                          
 
 
          
  
      
        
  
  
    
Alig confidence 























......





















...









....










Template Conservation      
        
     
  
 ......     
        
     
 ...     
    ....
  
  

   
Template Sequence  AGFPTTVNPTIQNGLIPVFVDVDI. . . . . . PTYNVNASLIEAAVSDKTKAIM. . . IAHTLGNLFD. . . . LAEVRRVADKY
Template Known Secondary structure  SS
TT

B
T......TT
SB
GGG

SS...
GGG



....
Template Predicted Secondary structure 











......














...









....
Template SS confidence 















































































   118.120.........130.........140. ........150.........160... ......170... ......180....
 
   217..220.........230.........240.........250.........260.........270......
Predicted Secondary structure 






























....................
Query SS confidence 



























































. . . . . . . . . . . . . . . . . . . .
Query Sequence  NALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVG. . . . . . . . . . . . . . . . . . . .
Query Conservation 
  

 


    
  
   
        

 
 

    
                   ....................
Alig confidence 



























































....................
Template Conservation 

 

 
 
 
 
            
    
 
  
 
    

        
      
   
                
Template Sequence  NLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAHHITMGEGGAVFTQSAELKSIIESFRDWGRDCYCLGSLPFGYDHK
Template Known Secondary structure  T

TT
TT
TTTTSSSS
STTSSS

SS
S
BTTB








TT

GG
Template Predicted Secondary structure 















































Template SS confidence 















































































   185....190.........200.........210.........220.........230.........240.........250.........260....
 
   277..280.........290.........300.........310.........320.. .......330.........340.........350.
Predicted Secondary structure  ..










...













Query SS confidence  . .













































. . .




























Query Sequence  . . THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTI. . . NHRYGLFSEVRGLGLLIGCVLNADYAGQA
Query Conservation  ..    
        
   
                        
  
...         
 
 
    
         
Alig confidence  ..













































...




























Template Conservation                  

     
                
   
                        
          
Template Sequence  YTYSHLGYNLKITDMQAACGLAQLERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSR
Template Known Secondary structure  G
B
S


B


BGGGGTTT




TT


SS
GGGSS
Template Predicted Secondary structure 































Template SS confidence 















































































   280.........290.........300.........310.........320.........330.........340.........350.........
 
   352.......360.........370 .........380.........390.......
Predicted Secondary structure 





............................





Query SS confidence 


















. . . . . . . . . . . . . . . . . . . . . . . . . . . .


























Query Sequence  KQISQEAAKAGVMVLIAGG. . . . . . . . . . . . . . . . . . . . . . . . . . . . NVVRFAPALNVSEEEVTTGLDRFAAAC
Query Conservation    
   
 
 

   
 
 ............................  


      
 
 
   
  
  

Alig confidence 


















............................


























Template Conservation    
   
   

                           
 
       
 

     
 



 
   
   
Template Sequence  IDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFF
Template Known Secondary structure  TTB

B

TTSSGGGSGGGTT



S



STT

T
Template Predicted Secondary structure 



























Template SS confidence 









































































   360.........370.........380.........390.........400.........410.........420.........430...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions