Phyre 2 alignment of P77581 with c2z61A

Job Description P77581
Confidence 99.93% Date Thu Jan 5 12:30:46 GMT 2012

Rank 146 Aligned Residues 325

% Identity 15% Template c2z61A_

PDB info PDB header:transferase Chain: A: PDB Molecule:probable aspartate aminotransferase 2; PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																			.	.																								.	.	.	.
Query SS confidence																																			.	.																								.	.	.	.
Query Sequence	Q	G	K	E	Y	I	D	F	A	G	G	I	A	V	N	A	L	G	H	A	H	P	E	L	R	E	A	L	N	E	Q	A	S	K	.	.	F	W	H	T	G	N	G	Y	T	N	E	P	V	L	R	L	A	K	K	L	I	D	A	.	.	.	.	T	F	A	D	R	V	F	F	C	N	S	G	A	E	A	N	E
Query Conservation																																			.	.																								.	.	.	.
Alig confidence												.	.							.															.	.																								.	.	.	.
Template Conservation												.	.							.
Template Sequence	E	G	K	K	V	I	H	L	E	I	G	.	.	E	P	D	F	N	T	.	P	K	P	I	V	D	E	G	I	K	S	L	K	E	G	K	T	H	Y	T	D	S	R	G	I	L	E	L	R	E	K	I	S	E	L	Y	K	D	K	Y	K	A	D	I	I	P	D	N	I	I	I	T	G	G	S	S	L	G	L	F
Template Known Secondary structure	T	T										.	.	S		S	S			.														T	T			S				T	T																	S	S					G	G	G					S	S
Template Predicted Secondary structure												.	.							.
Template SS confidence
	27	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.

	111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	D	S	T	C	A	V	I	V	E
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	A	L	S	S	I	.	.	.	.	.	.	.	.	I	D	D	G	D	E	V	L	I	Q	N	P	C	Y	P	C	Y	K	N	F	I	R	F	L	G	A	K	P	V	F	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	T	V	E	S	L	E	E	A	L	S	D	K	T	K	A	I	I	I	N
Template Known Secondary structure							.	.	.	.	.	.	.	.			T	T							S	S			T									T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S										S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	104	.	.	.	.	.									110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140															.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.
Query SS confidence																																																									.	.	.	.
Query Sequence	P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E	L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	A	Y	M	H	Y	G	V	T	P	D	.	.	.	.	L	L	T	T	A	K	A	L	G	G	G	F	P	V	G	A	L	L	A	T
Query Conservation																																																									.	.	.	.
Alig confidence											.	.	.	.	.																																										.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence	S	P	S	N	P	L	G	E	V	I	.	.	.	.	.	D	R	E	I	Y	E	F	A	Y	E	N	I	P	Y	I	I	S	D	E	I	Y	N	G	L	V	Y	E	G	K	C	Y	S	A	I	E	F	D	E	N	L	E	K	T	I	L	I	N	G	F	S	L	Y	A	M	T	G	W	R	I	G	Y	V	I	S	N
Template Known Secondary structure	S	S		T	T	T					.	.	.	.	.													S							T	T	T	T		B	S	S	S					G	G	G	T		T	T		S	S													G	G	G
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
	162	.	.	.	.	.	.	.	170	.						.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

	267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	E	C	A	R	V	M	T	V	G	T	H	G	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I	N	H	R	Y	G	L	F	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N	A	D
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence	D	E	I	I	E	A	I	L	K	L	Q	Q	N	L	F	I	S	A	P	T	I	S	Q	Y	A	A	L	K	A	F	.	E	K	E	T	E	R	E	I	N	S	M	I	K	E	F	D	R	R	R	R	L	V	L	K	Y	V	K	D	F	G	W	E	V	N	N	P	I	G	A	Y	Y	V	F	P	N	I	G	E	D
Template Known Secondary structure															T	S	S	S									G	G	G	G	.	S																												T	T		B						B	T	T					B		S	S
Template Predicted Secondary structure																															.
Template SS confidence
	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

	347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.							.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.
Query Sequence	Y	A	G	Q	A	K	Q	I	S	Q	E	A	A	K	A	G	V	M	V	L	I	A	.	.	.	.	.	.	G	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E	V	T	T	G	L	D	R	F	A	A	A	C
Query Conservation																							.	.	.	.	.	.
Alig confidence					.	.	.																.	.	.	.	.	.								.	.
Template Conservation					.	.	.																													.	.
Template Sequence	G	R	E	F	.	.	.	A	Y	K	L	L	K	E	K	F	V	A	L	T	P	G	I	G	F	G	S	K	G	K	N	Y	I	R	I	.	.	S	Y	A	N	S	Y	E	N	I	K	E	G	L	E	R	I	K	E	F	L
Template Known Secondary structure					.	.	.															G	G	G	G		G	G	G	S	S	B				.	.				S
Template Predicted Secondary structure					.	.	.																													.	.
Template SS confidence
	317	.	.	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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