Job Description P77581 Confidence 99.97% Date Thu Jan 5 12:30:46 GMT 2012 Rank 81 Aligned Residues 340 % Identity 14% Template c2o0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis Resolution 2.00 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																			.	.																												.	.	.	.	.
Query SS confidence																																			.	.																												.	.	.	.	.
Query Sequence		G	K	E	Y	I	D	F	A	G	G	I	A	V	N	A	L	G	H	A	H	P	E	L	R	E	A	L	N	E	Q	A	S	K	.	.	F	W	H	T	G	N	G	Y	T	N	E	P	V	L	R	L	A	K	K	L	I	D	A	T	F	A	D	.	.	.	.	.	R	V	F	F	C	N	S	G	A	E	A	N	E
Query Conservation																																			.	.																												.	.	.	.	.
Alig confidence																		.	.	.															.	.																												.	.	.	.	.
Template Conservation																		.	.	.
Template Sequence		R	I	G	A	V	N	L	G	Q	G	F	P	D	E	D	G	.	.	.	P	P	K	M	L	Q	A	A	Q	D	A	I	A	G	G	V	N	Q	Y	P	P	G	P	G	S	A	P	L	R	R	A	I	A	A	Q	R	R	R	H	F	G	V	D	Y	D	P	E	T	E	V	L	V	T	V	G	A	T	E	A	I	A
Template Known Secondary structure		T	T	T				S	S		S	S		S	S			.	.	.														T	T			S				T	T																							T	T	T	S
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	D	S	T	C	A	V	I	V	E
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template Sequence		A	A	V	L	G	L	.	.	.	.	.	.	.	.	.	V	E	P	G	S	E	V	L	L	I	E	P	F	Y	D	S	Y	S	P	V	V	A	M	A	G	A	H	R	V	T	V	P	L	V	P	D	G	R	G	F	.	.	.	.	A	L	D	A	D	A	L	R	R	A	V	T	P	R	T	R	A	L	I	I	N
Template Known Secondary structure								.	.	.	.	.	.	.	.	.			T	T								S			T	T								T	T												T	T			.	.	.	.													T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template SS confidence
		100	.	.	.	.	.										.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.																				.
Query SS confidence																																																.	.	.	.																				.
Query Sequence		P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E	L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	.	.	.	.	A	Y	M	H	Y	G	V	T	P	D	L	L	T	T	A	K	A	L	G	.	G	G	F	P	V	G	A	L	L	A
Query Conservation																																																.	.	.	.																				.
Alig confidence									.																																							.	.	.	.																				.
Template Conservation									.
Template Sequence		S	P	H	N	P	T	G	.	A	V	L	S	A	T	E	L	A	A	I	A	E	I	A	V	A	A	N	L	V	V	I	T	D	E	V	Y	E	H	L	V	F	D	H	A	R	H	L	P	L	A	G	F	D	G	M	A	E	R	T	I	T	I	S	S	A	A	M	F	N	C	T	G	W	K	I	G	W	A	C	G
Template Known Secondary structure		S	S		T	T	T		.																		T	T								T	T	T	T		B		T	T						G	G	G	S	T	T	T	G	G	G											S		T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		167	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	E	C	A	R	V	M	T	V	G	T	H	G	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I	N	H	R	Y	G	L	F	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N	A
Query Conservation
Alig confidence																																				.	.
Template Conservation																																				.	.
Template Sequence		P	A	E	L	I	A	G	V	R	A	A	K	Q	Y	L	S	Y	V	G	G	A	P	F	Q	P	A	V	A	L	A	L	D	T	E	.	.	D	A	W	V	A	A	L	R	N	S	L	R	A	R	R	D	R	L	A	A	G	L	T	E	I	G	F	A	V	H	D	S	Y	G	T	Y	F	L	C	A	D	P	R	P
Template Known Secondary structure																	T	S				T	T													.	.																										T								B	S	S							G	G
Template Predicted Secondary structure																																				.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.										370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.									.	.	.	.	.	.	.	.	.
Query SS confidence																		.									.	.	.	.	.	.	.	.	.
Query Sequence		D	Y	A	G	Q	A	K	Q	I	S	Q	E	A	A	K	A	.	G	V	M	V	L	I	A	G	.	.	.	.	.	.	.	.	.	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E	V	T	T	G	L	D	R	F	A	A	A	C	E
Query Conservation																		.									.	.	.	.	.	.	.	.	.
Alig confidence																		.									.	.	.	.	.	.	.	.	.							.	.
Template Conservation																																										.	.
Template Sequence		L	G	Y	D	D	S	T	E	F	C	A	A	L	P	E	K	V	G	V	A	A	I	P	M	S	A	F	C	D	P	A	D	V	W	N	H	L	V	R	F	.	.	T	F	C	K	R	D	D	T	L	D	E	A	I	R	R	L	S	V	L	A	E
Template Known Secondary structure		G	T																S						G	G	G	G	S						G	G	G					.	.				S													G	G	G	G
Template Predicted Secondary structure																																										.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions