Job Description P77581 Confidence 99.94% Date Thu Jan 5 12:30:46 GMT 2012 Rank 137 Aligned Residues 330 % Identity 13% Template c2dr1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3 Resolution 1.90 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																										.																					.	.	.
Query SS confidence																										.																					.	.	.
Query Sequence		A	L	G	H	A	H	P	E	L	R	E	A	L	N	E	Q	A	S	K	F	W	H	T	G	.	N	G	Y	T	N	E	P	V	L	R	L	A	K	K	L	I	D	A	T	F	.	.	.	A	D	R	V	F	F	C	N	S	G	A	E	A	N	E	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H
Query Conservation																										.																					.	.	.
Alig confidence																										.																					.	.	.																								.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.
Template Sequence		L	F	T	A	G	P	V	A	C	F	P	E	V	L	E	I	M	K	V	Q	M	F	S	H	R	S	K	E	Y	R	K	V	H	M	D	T	V	E	R	L	R	E	F	L	E	V	E	K	G	E	V	L	L	V	P	S	S	G	T	G	I	M	E	A	S	I	R	N	G	V	S	.	.	.	.	.	.	.	.	K
Template Known Secondary structure					S	S	S											T	T	S					T	T	S																			T		S	S	S						S	S														S		.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.									.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																			.																																						.	.
Query SS confidence																			.																																						.	.
Query Sequence		K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	.	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	.	.	D	S	T	C	A	V	I	V	E	P	I	Q	G	E	G	G	V	V	P	A	S	N	A
Query Conservation																			.																																						.	.
Alig confidence																			.																	.	.	.	.	.	.	.															.	.																					.	.	.
Template Conservation																																				.	.	.	.	.	.	.																																					.	.	.
Template Sequence		G	G	K	V	L	V	T	I	I	G	A	F	G	K	R	Y	K	E	V	V	E	S	N	G	R	K	A	V	V	L	E	Y	E	P	.	.	.	.	.	.	.	G	K	A	V	K	P	E	D	L	D	D	A	L	R	K	N	P	D	V	E	A	V	T	I	T	Y	N	E	T	S	T	G	V	L	N	P	.	.	.
Template Known Secondary structure		T								S	S													T	T										T	.	.	.	.	.	.	.	T																T	T								S			T	T	T	T					.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.																																					.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		F	L	Q	G	L	R	E	L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	A	Y	M	H	Y	G	V	T	P	D	L	L	T	T	A	K	A	L	G	G	G	F	P	V	G	A	L	L	A	T	E	E	C	A	R	V	M	T	V	G	T	H	G	T	T	Y	.	.
Query Conservation																																																																																.	.
Alig confidence		.																															.	.	.																																													.	.
Template Conservation		.																															.	.	.
Template Sequence		.	L	P	E	L	A	K	V	A	K	E	H	D	K	L	V	F	V	D	A	V	S	A	M	G	G	A	D	I	K	F	.	.	.	D	K	W	G	L	D	V	V	F	S	S	S	Q	K	A	F	G	V	P	P	G	L	A	I	G	A	F	S	E	R	F	L	E	I	A	E	K	M	P	E	R	G	W	Y	F	D
Template Known Secondary structure		.											T	T								T	T	T	B	T	T	B				T	.	.	.	T	T	T	T		S						T	T	S	T	T				S	S															T	T		T	T			S	T	T
Template Predicted Secondary structure		.																															.	.	.
Template SS confidence
			165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
																		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I	N	H	R	Y	G	.	L	F	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.
Template Conservation
Template Sequence		I	P	L	Y	V	K	Y	L	K	E	K	E	S	T	P	S	T	P	P	M	P	Q	V	F	G	I	N	V	A	L	R	I	I	E	K	M	G	G	K	E	K	W	L	E	M	Y	E	K	R	A	K	M	V	R	E	G	V	R	E	I	G	L	D	I	L	A	E	P	G	H	E	S	P	T	I	T	A	V	L	T
Template Known Secondary structure													S	S		S	S																				T	T																							T	T			B	S	S		T	T		B		S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.					.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		D	Y	A	G	Q	A	K	Q	I	S	Q	E	A	A	K	A	G	V	M	V	L	I	A	.	.	.	.	G	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E	V	T	T	G	L	D	R	F	A	A	A	C	E	H	F	V	S	R
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.
Template Conservation
Template Sequence		P	P	G	I	K	G	D	E	V	Y	E	A	M	R	K	R	G	F	E	L	A	K	G	Y	G	S	V	K	E	K	T	F	R	I	G	H	M	G	Y	M	K	F	E	D	I	Q	E	M	L	D	N	L	R	E	V	I	N	E	L	K	K	Q
Template Known Secondary structure			T	T													T	T								G	G	G	T	T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions