Job Description P77581 Confidence 99.97% Date Thu Jan 5 12:30:46 GMT 2012 Rank 58 Aligned Residues 332 % Identity 14% Template c2douA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8 Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.										.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																.													.	.	.	.	.	.	.	.	.
Query SS confidence																																																.													.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	K	E	Y	I	D	F	A	G	G	I	A	V	N	A	L	G	H	A	H	P	E	L	R	E	A	L	N	E	Q	A	S	K	F	W	H	T	G	N	G	Y	T	N	E	P	.	V	L	R	L	A	K	K	L	I	D	A	T	.	.	.	.	.	.	.	.	.	F	A	D	R	V	F	F	C	N	S	G	A
Query Conservation																																																.													.	.	.	.	.	.	.	.	.
Alig confidence													.	.							.																.	.										.													.	.	.	.	.	.	.	.	.
Template Conservation													.	.							.																.	.
Template Sequence		R	G	V	G	L	I	D	L	S	I	G	.	.	S	T	D	L	P	P	.	P	E	A	P	L	K	A	L	A	E	A	L	N	D	P	.	.	T	T	Y	G	Y	C	L	K	S	C	T	L	P	F	L	E	E	A	A	R	W	Y	E	G	R	Y	G	V	G	L	D	P	R	R	E	A	L	A	L	I	G	S	Q
Template Known Secondary structure		T	T							S	S		.	.							.												T	T		G	.	.	G	G	S	S																							S					T	T	T	S					S	S
Template Predicted Secondary structure													.	.							.																.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	N	E	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P	A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	D	S	T	C	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Sequence		E	G	L	A	H	L	L	L	A	L	.	.	.	.	.	.	.	.	.	T	E	P	E	D	L	L	L	L	P	E	V	A	Y	P	S	Y	F	G	A	A	R	V	A	S	L	R	T	F	L	I	P	L	R	E	.	.	.	.	.	.	.	D	G	L	A	D	L	K	A	V	P	E	G	V	W	R	E	A	K	V
Template Known Secondary structure												.	.	.	.	.	.	.	.	.			T	T							S	S												T	T								B		T	.	.	.	.	.	.	.	T	S	S	B		G	G	G	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.										.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.								.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.
Predicted Secondary structure																																																				.	.	.	.																				.
Query SS confidence																																																				.	.	.	.																				.
Query Sequence		V	I	V	E	P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E	L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	.	.	.	.	A	Y	M	H	Y	G	V	T	P	D	L	L	T	T	A	K	A	L	G	.	G	G	F	P	V	G
Query Conservation																																																				.	.	.	.																				.
Alig confidence													.																																							.	.	.	.																				.
Template Conservation													.
Template Sequence		L	L	L	N	Y	P	N	N	P	T	G	.	A	V	A	D	W	G	Y	F	E	E	A	L	G	L	A	R	K	H	G	L	W	L	I	H	D	N	P	Y	V	D	Q	V	Y	E	G	E	A	P	S	P	L	A	L	P	G	A	K	E	R	V	V	E	L	F	S	L	S	K	S	Y	N	L	A	G	F	R	L	G
Template Known Secondary structure						S	S		T	T	T		.																		T	T								T	T	G	G	G	B	S	S	S					G	G	G	S	T	T	G	G	G	T												T		G	G	G
Template Predicted Secondary structure													.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	A	T	E	E	C	A	R	V	M	T	V	G	T	H	G	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I	N	H	R	Y	G	L	F	S	E	V	R	G	L	G	L	L	I	G	C
Query Conservation
Alig confidence																																								.	.																																		.
Template Conservation																																								.	.																																		.
Template Sequence		F	A	L	G	S	E	E	A	L	A	R	L	E	R	V	K	G	V	I	D	F	N	Q	Y	A	G	V	L	R	M	G	V	E	A	L	K	T	P	.	.	K	E	V	V	R	G	Y	A	R	V	Y	R	E	R	A	L	G	M	A	E	A	L	K	G	V	L	S	L	L	P	P	R	A	.	T	M	Y	L	W	G
Template Known Secondary structure																								S													T	S		.	.																							T	T	T	S							B	.	S	S
Template Predicted Secondary structure																																								.	.																																		.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.							.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		V	L	N	A	D	Y	A	G	Q	A	K	Q	I	S	Q	E	A	A	K	A	G	V	M	V	L	I	A	.	.	.	.	.	.	G	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E	V	T	T	G	L	D	R	F	A	A	A	C
Query Conservation																													.	.	.	.	.	.
Alig confidence				.	.																								.	.	.	.	.	.								.	.
Template Conservation				.	.																																					.	.
Template Sequence		R	L	.	.	P	E	G	V	D	D	L	E	F	G	L	R	L	V	E	R	G	V	A	L	A	P	G	R	G	F	G	P	G	G	K	G	F	V	R	I	.	.	A	L	V	R	P	L	E	E	L	L	E	A	A	K	R	I	R	E	A	L
Template Known Secondary structure				.	.		T	T													T	T						G	G	G	G		G	G	G	T	T					.	.				S															T
Template Predicted Secondary structure				.	.																																					.	.
Template SS confidence
		318	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions