Job Description P77581 Confidence 100.00% Date Thu Jan 5 12:30:46 GMT 2012 Rank 34 Aligned Residues 363 % Identity 25% Template c2cy8A_ PDB info PDB header:transferase Chain: A: PDB Molecule:d-phenylglycine aminotransferase; PDBTitle: crystal structure of d-phenylglycine aminotransferase (d-phgat) from2 pseudomonas strutzeri st-201 Resolution 2.30 Å

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		5	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		I	T	R	E	N	F	D	E	W	M	.	I	P	V	Y	A	P	A	P	F	I	P	V	R	G	E	G	S	R	L	W	D	Q	Q	G	K	E	Y	I	D	F	A	G	G	I	A	V	N	A	L	G	H	A	H	P	E	L	R	E	A	L	N	E	Q	A	S	K	F	W	H	T	G	N	G	Y	T	N	E	P	V
Query Conservation												.
Alig confidence												.																																																										.	.
Template Conservation																																																																						.	.
Template Sequence		F	W	A	Q	R	A	R	S	V	M	P	D	G	A	F	D	P	H	G	L	F	I	S	D	A	Q	G	V	H	K	T	D	V	D	G	N	V	Y	L	D	F	F	G	G	H	G	A	L	V	L	G	H	G	H	P	R	V	N	A	A	I	A	E	A	L	S	H	G	.	.	V	Q	Y	A	A	S	H	P	L	E
Template Known Secondary structure											S						S	S										B	T					T	T							S		T	T	T	T	S		T	T		B	T													T	T	T	.	.		S	S		S	S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.
		84	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		L	R	L	A	K	K	L	I	D	A	T	.	F	A	D	R	V	F	F	C	N	S	G	A	E	A	N	E	A	A	L	K	L	A	R	K	F	A	H	D	R	Y	G	S	H	K	S	G	I	V	A	F	K	N	A	F	H	G	R	T	L	F	T	V	S	A	G	G	Q	P	A	Y	S	Q	D	F	A	P	L	P
Query Conservation													.
Alig confidence													.																										.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	W	A	E	R	I	V	A	A	F	P	S	I	R	K	L	R	F	T	G	S	G	T	E	T	T	L	L	A	L	R	V	A	R	A	F	.	.	.	.	.	.	T	G	R	R	M	I	L	R	F	E	G	T	T	A	N	T	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T		S						S																	.	.	.	.	.	.													G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	I	R	H	A	A	Y	N	D	I	N	S	A	S	A	L	I	D	D	S	T	C	A	V	I	V	E	P	I	Q	G	E	G	G	V	V	P	A	S	N	A	F	L	Q	G	L	R	E	L	C	N	R	H	N	A	L	L	I	F	D	E	V	Q	T	G	V	G	R	T	G	E	L	Y	A	Y	M	H	Y	G
Query Conservation
Alig confidence		.	.																																																																		.
Template Conservation		.	.																																																																		.
Template Sequence		.	.	I	R	P	D	D	I	E	G	M	R	E	V	F	A	N	H	G	S	D	I	A	A	F	I	A	E	P	V	G	S	H	F	G	V	T	P	V	S	D	S	F	L	R	E	G	A	E	L	A	R	Q	Y	G	A	L	F	I	L	D	E	V	I	S	G	F	.	R	V	G	N	H	G	M	Q	A	L	L	D
Template Known Secondary structure		.	.			T	T													G	G	G								S	S						T																		T	T								T	T	T	T	T	.	T	T		T	T							T
Template Predicted Secondary structure		.	.																																																																		.
Template SS confidence
				183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	P	D	L	L	T	T	A	K	A	L	G	G	G	F	P	V	G	A	L	L	A	T	E	E	C	A	R	V	M	T	V	G	T	H	G	T	T	Y	G	G	N	P	L	A	S	A	V	A	G	K	V	L	E	L	I	N	T	P	E	M	L	N	G	V	K	Q	R	H	D	W	F	V	E	R	L	N	T	I
Query Conservation
Alig confidence																															.	.	.	.
Template Conservation																															.	.	.	.
Template Sequence		V	Q	P	D	L	T	C	L	A	K	A	S	A	G	G	L	P	G	G	I	L	G	G	R	E	D	V	M	G	.	.	.	.	V	L	S	R	G	S	F	T	G	N	P	I	T	A	A	A	A	I	A	A	I	D	T	I	L	E	D	D	V	C	A	K	I	N	D	L	G	Q	F	A	R	E	A	M	N	H	L
Template Known Secondary structure					S						G	G	G	G	T	T	S	S												T	.	.	.	.	T	S	S	S																							T	T
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.					.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.																		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	H	R	Y	G	L	F	S	E	V	R	G	L	G	L	L	I	G	C	V	L	N	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	G	Q	A	K	Q	I	S	Q	E	A	A	K	A	G	V	M	V	L	I	A	G	G	N	V	V	R	F	A	P	A	L	N	V	S	E	E	E
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		F	A	R	K	G	L	N	W	L	A	Y	G	R	F	S	G	F	H	L	M	P	G	L	P	P	N	T	T	D	T	G	S	I	T	R	A	E	V	A	R	P	D	V	K	M	I	A	A	M	R	M	A	L	I	L	E	G	V	D	I	G	G	R	G	.	.	.	.	S	V	F	L	S	A	Q	H	E	R	E	H
Template Known Secondary structure					T	T									T	T							T	S		T	T									T	T		S																		T	T				B	T	T	T	.	.	.	.						T	T
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.					.	410	.	.	.	.	.	.	.	.	.	420
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	T	G	L	D	R	F	A	A	A	C	E	H	F	V	S	R	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	H	L	V	T	T	F	D	R	V	L	D	R	L	A	D	E	N	L
Template Known Secondary structure																			T	T
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions