Job Description P23845 Confidence 99.64% Date Thu Jan 5 11:39:52 GMT 2012 Rank 85 Aligned Residues 149 % Identity 23% Template c3r7wC_ PDB info PDB header:protein transport Chain: C: PDB Molecule:gtp-binding protein gtr1; PDBTitle: crystal structure of gtr1p-gtr2p complex Resolution 2.77 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F	S	T	E	K	R
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	L	L	L	X	G	R	S	G	S	G	K	S	S	X	R	S	I	I	F	S	N	Y	S	A	F	D	T	R	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	T	I	D	V	E	H	S	H	L	R	F	L	G	N
Template Known Secondary structure										T	T	S											S				T	T	G	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S									T	T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.																																	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
			108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.							.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure		.																		.	.	.	.	.																																			.	.	.	.	.	.
Query SS confidence		.																		.	.	.	.	.																																			.	.	.	.	.	.
Query Sequence		.	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	.	.	.	.	.	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	.	.	.	.	.	.	G	I	K	H	L	V	V	A	I	N	K	M	D	L	V	D	Y
Query Conservation		.																		.	.	.	.	.																																			.	.	.	.	.	.
Alig confidence		.																		.	.	.	.	.																																			.	.	.	.	.	.				.
Template Conservation																																																																				.
Template Sequence		X	T	L	N	L	W	D	C	G	G	Q	D	V	F	X	E	N	Y	F	T	K	Q	K	D	H	I	F	Q	X	V	Q	V	L	I	H	V	F	D	V	E	S	T	E	V	L	K	D	I	E	I	F	A	K	A	L	K	Q	L	R	K	Y	S	P	D	A	K	.	I	F	V	L	L	H	K	X	D	L	V	Q	L
Template Known Secondary structure												S									T	T	T						T	T										T	T		T	T																				T	T			.								T	T	S	S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.
		176	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		S	E	.	.	E	T	F	T	R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	D	I	R	F	V	P	L	S	A	L	E	G
Query Conservation				.	.
Alig confidence				.	.																					.
Template Conservation																										.
Template Sequence		D	K	R	E	E	L	F	Q	I	X	X	K	N	L	S	E	T	S	S	E	F	G	F	P	.	N	L	I	G	F	P	T	S	I	W	D	E
Template Known Secondary structure																					T	T	T			.	S								T	T	S	T
Template Predicted Secondary structure																										.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions