Job Description P23845 Confidence 100.00% Date Thu Jan 5 11:39:52 GMT 2012 Rank 7 Aligned Residues 405 % Identity 28% Template c3p27A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: crystal structure of a translational gtpase (gdp form) Resolution 2.95 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	A	Q	Q	I	A	N	E	G	G	V	E	A	W	M	I	A	Q	Q	H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V
Query Conservation
Alig confidence																					.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	V	P	T	K	P	K	K	P	H	D	I	S	A	F	V	K	S	.	.	A	L	P	H	L	S	F	V	V	L	G	H	V	D	A	G	K	S	T	L	X	G	R	L	L	Y	D	L	N	I	V	N	Q	S	Q	L	R	K	L	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S					S	S											.	.	S												T	T	S	S												T	T	S	S		T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F	S	T	E	K	R	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	.	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	I	K
Query Conservation																																																															.
Alig confidence		.	.	.	.																																.	.	.	.																							.
Template Conservation		.	.	.	.																																.	.	.	.
Template Sequence		.	.	.	.	W	I	X	D	Q	T	V	T	V	S	I	C	T	S	H	F	S	T	H	R	A	N	F	T	I	V	D	A	P	G	V	.	.	.	.	P	N	A	I	X	G	I	S	Q	A	D	X	A	I	L	C	V	D	C	S	T	F	D	L	D	G	Q	T	K	E	H	X	L	L	A	S	S	L	G	I	H
Template Known Secondary structure		.	.	.	.																			S	S												.	.	.	.											S																											T	T
Template Predicted Secondary structure		.	.	.	.																																.	.	.	.
Template SS confidence
						218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																							.																		.	.	.																					.	.
Query SS confidence																																							.																		.	.	.																					.	.
Query Sequence		H	L	V	V	A	I	N	K	M	D	L	V	D	Y	S	E	E	T	F	T	R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	.	D	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	.	.	.	Q	S	E	S	M	P	W	Y	S	G	P	T	L	L	E	V	L	E	T	V	.	.
Query Conservation																																							.																		.	.	.																					.	.
Alig confidence																																							.																		.	.	.																					.	.
Template Conservation
Template Sequence		N	L	I	I	A	X	N	K	X	D	N	V	D	W	S	Q	Q	R	F	E	E	I	K	S	K	L	L	P	Y	L	V	D	I	G	F	F	E	D	N	I	N	W	V	P	I	S	G	F	S	G	E	G	V	Y	K	I	E	Y	T	D	E	V	R	Q	W	Y	N	G	P	N	L	X	S	T	L	E	N	A	A	F
Template Known Secondary structure										G	G	G	G	T	T																				T			G	G	G								T	T	T		B	T	T	S	S	B								T	T			S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
						236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																												.	.	.
Query SS confidence		.	.	.	.																																																												.	.	.
Query Sequence		.	.	.	.	E	I	Q	R	V	V	D	A	Q	P	M	R	F	P	V	Q	Y	V	N	R	P	N	L	D	F	R	G	Y	A	G	T	L	A	S	G	R	V	E	V	G	Q	R	V	K	V	L	P	S	G	V	E	S	N	V	A	R	I	V	T	.	.	.	F	D	G	D	R	E	E	A	F	A	G	E	A	I
Query Conservation		.	.	.	.																																																												.	.	.
Alig confidence		.	.	.	.																				.	.																																							.	.	.
Template Conservation																									.	.
Template Sequence		K	I	S	K	E	N	E	G	I	N	K	D	D	P	F	L	F	S	V	L	E	I	I	.	.	P	S	K	L	A	L	V	S	G	K	L	E	S	G	S	I	Q	P	G	E	S	L	T	I	Y	P	S	E	Q	S	C	I	V	D	K	I	Q	V	G	S	Q	Q	H	E	E	T	D	V	A	I	K	G	D	F	V
Template Known Secondary structure							T	T	S			S	S	S											.	.														S				T	T							T	T	T											T	T	T						S				T	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.			410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		309	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.
Predicted Secondary structure								.	.															.																	.																																						.
Query SS confidence								.	.															.																	.																																						.
Query Sequence		T	L	V	L	T	D	.	.	E	I	D	I	S	R	G	D	L	L	L	A	A	D	.	E	A	L	P	A	V	Q	S	A	S	V	D	V	V	W	M	.	A	E	Q	P	L	S	P	G	Q	S	Y	D	I	K	I	A	G	K	K	T	R	A	R	V	D	G	I	R	Y	Q	V	D	I	N	N	L	T	.	Q	R
Query Conservation								.	.															.																	.																																						.
Alig confidence								.	.															.																	.																																						.
Template Conservation
Template Sequence		T	L	K	L	R	K	A	Y	P	E	D	I	Q	N	G	D	L	A	A	S	V	D	Y	S	S	I	H	S	A	Q	C	F	V	L	E	L	T	T	F	D	X	N	R	P	L	L	P	G	T	P	F	I	L	F	I	G	V	K	E	Q	P	A	R	I	K	R	L	I	S	F	I	D	K	G	N	T	A	S	K	K
Template Known Secondary structure							S			G	G	G			T	T						T	T								S												S	S		B		T	T								T	T																S	T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400				.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		E	V	E	N	L	P	L	N	G	I	G	L	V	D	L	T	F	.	.	.	D	E	P	L	V	L	D	R	Y	Q	Q	N	P	V	T	G	G	L	I	F	I	D	R	L	S	N	V	T	V	G	A	G	M	V	H	E	P	V	S
Query Conservation																			.	.	.
Alig confidence																			.	.	.																							.	.
Template Conservation																																												.	.
Template Sequence		K	I	R	H	L	G	S	K	Q	R	A	F	V	E	I	E	L	I	E	V	K	R	W	I	P	L	L	T	A	H	E	N	D	R	L	G	R	V	V	L	R	K	.	.	D	G	R	T	I	A	A	G	K	I	S	E	I	T	Q
Template Known Secondary structure				S		B		T	T											S		S	S							T	T	T		T	T	T	T							.	.	T	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.			.	.	.	600	.	.	.	.	.	.	.	.	.	610	.