Job Description P23845 Confidence 99.59% Date Thu Jan 5 11:39:52 GMT 2012 Rank 90 Aligned Residues 159 % Identity 21% Template c3nxsA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:lao/ao transport system atpase; PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp Resolution 2.30 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	G	S	A	M	H	V	G	I	T	G	V	P	G	V	G	K	S	T	T	I	E	A	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	H	L	I	E	A	G	H	R	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	A	V	D	R	M	A	R	L	A
Template Known Secondary structure		T	T	T		S									T	T	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.															.	.	.	.	80	.	.	.	.	.	.																			.	.	.	90	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																												.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	T	E	K	R	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		V	H	P	D	A	Y	I	R	P	S	P	T	S	G	T	L	G	G	V	A	K	A	T	R	E	T	I	V	L	L	E	A	A	G	Y	D	V	I	L	V	E	T	V	G	V	G	Q	S	E	V	T	V	A	G	M	V	D	T	F	V	F	L	T	L	A	R	T	G	D	Q	L	Q	G	I	K	.	.	.	.	K
Template Known Secondary structure				T	T										S																			T	T												T	T							T	T		S									S	S	S	S							.	.	.	.	T
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		T	L	L	G	I	K	H	L	V	V	A	I	N	K	M	D	L	V	D	Y	S	E	E	T	F	T	R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	.	.	.	D	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	Q	S	E	S	M
Query Conservation																																													.	.	.
Alig confidence								.												.	.																								.	.	.
Template Conservation								.												.	.
Template Sequence		G	V	L	E	L	A	.	D	V	I	V	V	N	K	A	D	G	E	.	.	H	A	V	E	A	K	A	A	A	R	E	L	S	G	A	I	R	L	I	Y	P	R	E	S	L	W	R	P	P	V	L	T	M	S	A	V	E	G	T	G	L	P	E	L	W	E	T	V
Template Known Secondary structure		T		G	G	G		.	S									G	G	.	.	G																			S		T	T		S										T	T	T		T	T
Template Predicted Secondary structure								.												.	.
Template SS confidence
		189	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions