Job Description P23845 Confidence 99.37% Date Thu Jan 5 11:39:52 GMT 2012 Rank 113 Aligned Residues 166 % Identity 19% Template c3c5hA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1; PDBTitle: crystal structure of the ras homolog domain of human grlf12 (p190rhogap) Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.										.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.
Query Sequence		K	S	L	L	R	F	L	T	C	G	S	V	D	D	.	.	.	.	.	.	.	.	.	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I
Query Conservation																.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	T	Y	N	I	S	V	V	G	L	S	G	T	E	K	E	K	G	Q	C	G	I	G	K	S	C	L	C	N	R	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	S	A	D	E	F	H	L	D	H	T	S	V	L	S	T	S	D	F	G	G	R	V	V	N	N
Template Known Secondary structure			S									S				T	T	T	T	T	T				S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	T	T	T			S												T	S	T	T	T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110						.	.	.	.	.	.	.	.	.	120	.	.																																						.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	A	Y	R	Y	F	S	T	E	K	R	K	F	I	.	.	.	.	.	I	A	D	T	P	G	H	E	Q	Y	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	M	A	T	G	A	S	T	C	E	L
Query Conservation																	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	H	F	L	Y	W	G	E	V	S	K	M	H	I	V	E	Q	T	E	F	I	D	D	Q	T	F	Q	P	H	R	S	T	A	L	Q	P	Y	I	K	R	A	A	A	T	K	L	A	S	A	E	K	L	M	Y	F	C	T	D	Q	L	G	L	E	Q	D	F	E	Q	K	Q	M	P	D	G	K	L	L	V	D	G
Template Known Secondary structure			S																					T	T	T		S	B	T	T	G	G	G									T		S					T	T		B					G	G	G	T	T		G	G	G	S				B		G	G	G
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	.	.	.	G	I	K	H	L	V	V	A	I	N	K	M	D	L	V	D	Y	S	E	E	T	F	T	R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	D	I	R	F	V	P	L	S	A	L	E	G
Query Conservation																											.	.	.
Alig confidence																											.	.	.				.													.	.	.	.	.	.	.	.	.
Template Conservation																																	.													.	.	.	.	.	.	.	.	.
Template Sequence		F	L	L	G	I	D	V	S	R	N	F	D	D	Q	L	K	F	V	S	N	L	Y	N	Q	L	A	K	T	K	K	P	.	I	V	V	V	L	T	K	C	D	E	G	V	.	.	.	.	.	.	.	.	.	E	R	Y	I	R	D	A	H	T	F	A	L	S	K	K	N	L	Q	V	V	E	T	S	A	R	S	N
Template Known Secondary structure									B																				T	T			.								G	G	G	B		.	.	.	.	.	.	.	.	.													T	S	S	S							B	T	T	T	T
Template Predicted Secondary structure																																	.													.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.										.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	A	S	Q	S	E	S	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	V	D	L	A	F	S	T	L
Template Known Secondary structure		B	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions