Return to main results Retrieve Phyre Job Id

Job DescriptionP23845
Confidence100.00%DateThu Jan 5 11:39:52 GMT 2012
Rank20Aligned Residues253
% Identity26%Templatec2ywfA_
PDB info PDB header:translationChain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
Resolution2.24 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80.........90.........100..
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF
Query Conservation    
  


 











 
 

   
 
               
            
    

 




       
Alig confidence 





























.....................................












Template Conservation      



 





 




   

    .....................................  



       
Template Sequence  EQKNVRNFCIIAHVDHGKSTLADRLLEYTG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AIGITVKMQAVRM
Template Known Secondary structure 
GGG
TTSST.....................................






S
S
Template Predicted Secondary structure 














.....................................


Template SS confidence 















































































   2.......10.........20.........30. ........40....
 
   103......110.........120.........130.........140.........150.........160.........170.......
Predicted Secondary structure  .....


























Query SS confidence  . . . . .










































































Query Sequence  . . . . . STEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSE
Query Conservation  .....      
 


 


  
    
 
    
 






  
   

 


 
   


  








 
    
Alig confidence  .....


























































.














Template Conservation             








 

  
    
   
 






  
   

           

. 







   
  
Template Sequence  FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV. IIPVINKIDLPSADV
Template Known Secondary structure 
TTS




SGGGT
STTT
S
TT
.
TTSTT

Template Predicted Secondary structure 




















.







Template SS confidence 















































































   64.....70.........80.........90.........100.........110.........120....... ..130.........140..
 
   178.180.........190.........200.........210.........220.........230.........240.........250.......
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  ETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPN
Query Conservation   
   
       
          





  
 

        

 
 


  
            
    
  
    
Alig confidence  ...










....




















...........





























Template Conservation  ...     

   
....      

  


 
 

  
...........
  
    
 
      

   
     
 
Template Sequence  . . . DRVKKQIEEVL. . . . GLDPEEAILASAKEGIGIEEI. . . . . . . . . . . LEAIVNRIPPPKGDPQKPLKALIFDSYYDP
Template Known Secondary structure  ...T....


GGG

BTTTTBS...........S





TTS

T
Template Predicted Secondary structure  .......













...........













Template SS confidence 















































































   143......150... ......160.........170.... .....180.........190.........200....
 
   258.260.........270.........280.........290...... ...300.........310... ......320.........330.
Predicted Secondary structure 













...








..










Query SS confidence 






































. . .
















. .

















Query Sequence  LDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFD. . . GDREEAFAGEAITLVLT. . DEIDISRGDLLLAADEAL
Query Conservation 
 
 

 
 
  
 
  
  
 
 
      



    ...  
  
 


 
 
 
 ..    
 

 

       
Alig confidence 






































...
















..

















Template Conservation    
 
   

 

 
  

 
          
  
         
  
 



  
      
     



       
Template Sequence  YRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPT
Template Known Secondary structure  TTS
TT
TTTT

SSSS
TT
S



GGGS
TT
SSS

Template Predicted Secondary structure 





























Template SS confidence 














































































   205....210.........220.........230.........240.........250.........260.........270.........280...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions