Job Description P23845 Confidence 97.76% Date Thu Jan 5 11:39:52 GMT 2012 Rank 316 Aligned Residues 115 % Identity 17% Template c2yc2D_ PDB info PDB header:transport protein Chain: D: PDB Molecule:small rab-related gtpase; PDBTitle: intraflagellar transport complex 25-27 from chlamydomonas Resolution 2.59 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.
Predicted Secondary structure																	.	.	.	.																																																			.	.	.	.	.	.
Query SS confidence																	.	.	.	.																																																			.	.	.	.	.	.
Query Sequence		G	I	T	I	D	V	A	Y	R	Y	F	S	T	E	K	.	.	.	.	R	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	.	.	.	.	.	.	L	L	G	I	K
Query Conservation																	.	.	.	.																																																			.	.	.	.	.	.
Alig confidence																	.	.	.	.																																																			.	.	.	.	.	.
Template Conservation
Template Sequence		R	C	K	V	A	V	V	V	A	P	V	T	I	P	D	T	T	V	S	V	E	L	F	L	L	D	T	A	G	S	D	L	Y	K	E	Q	I	S	Q	Y	W	N	G	V	Y	Y	A	I	L	V	F	D	V	S	S	M	E	S	F	E	S	C	K	A	W	F	E	L	L	K	S	A	R	P	D	R	E	R	P	L
Template Known Secondary structure															T	T	S	S										T	T	T	T								S	T	T													T	T																				S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		H	L	V	V	A	I	N	K	M	D	L	V	D	Y	S	E	E	T	F	T	R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	D	I	R	F	V	P	L	S	A	L	E	G	.	.	D	N	V	A	S	Q	S	E	S	M
Query Conservation																																																			.	.
Alig confidence													.	.	.													.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation													.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	V	L	V	A	N	K	T	Q	V	.	.	.	R	L	D	M	A	Q	D	W	A	T	T	N	.	.	.	.	.	.	.	.	.	.	.	T	L	D	F	F	D	V	S	A	A	D	A	P	F	L	S	I	A	T	T	F	Y	R	N
Template Known Secondary structure													.	.	.													.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure													.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140				.	.	.	.	.	.	.	.	.	150	.	.												.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions