Job Description P23845 Confidence 99.42% Date Thu Jan 5 11:39:52 GMT 2012 Rank 106 Aligned Residues 161 % Identity 17% Template c2wwwB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein Resolution 2.64 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y
Query Conservation
Alig confidence																															.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	K	P	L	A	F	R	V	G	L	S	G	P	P	G	A	G	K	S	T	F	I	E	Y	F	G	K	M	.	.	.	.	L	T	E	R	G	H	K	L	S	V	L	A	V	D	T	E	L	S	R	D	M	N	A	Y	I	R	P	T	R	T	T	N	E	A	I	L	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T			S	S									T	T	S	S												.	.	.	.				T	T												S	S	S		T	T							T	T								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	T	E	K	R	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	I	K	H	L	V	V	A	I	N	K	M	D	L	V	D	Y	S	E	E	T	F	T
Query Conservation
Alig confidence																	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.												.	.
Template Conservation																	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.												.	.
Template Sequence		C	E	G	A	G	Y	D	I	I	L	I	E	T	V	G	.	.	.	.	.	Q	S	E	F	A	V	A	D	M	V	D	M	F	V	L	L	L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	E	M	A	.	D	L	V	A	V	T	K	S	D	G	D	.	.	L	I	V	P	A	R
Template Known Secondary structure					T	T		S									.	.	.	.	.								T	T	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S		.	S								S	T	T	.	.	S	S
Template Predicted Secondary structure																	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.												.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.																	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	D	.	.	.	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	Q	S	E	S	M
Query Conservation																				.	.	.
Alig confidence																				.	.	.
Template Conservation
Template Sequence		R	I	Q	A	E	Y	V	S	A	L	K	L	L	R	K	R	S	Q	V	W	K	P	K	V	I	R	I	S	A	R	S	G	E	G	I	S	E	M	W	D	K	M
Template Known Secondary structure												T	T	S			S		S	S										T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions