Job Description P23845 Confidence 98.73% Date Thu Jan 5 11:39:52 GMT 2012 Rank 215 Aligned Residues 153 % Identity 22% Template c2oilA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:ras-related protein rab-25; PDBTitle: crystal structure of human rab25 in complex with gdp Resolution 2.30 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F	S	T	E	K
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	K	V	V	L	I	G	E	S	G	V	G	K	T	N	L	L	S	R	F	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	F	S	H	D	S	R	T	T	I	G	V	E	F	S	T	R	T	V	M	L	G	T
Template Known Secondary structure									S	S	T	T	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				S	S					S	S											T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																																		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		107	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure								.	.																																																.	.	.
Query SS confidence								.	.																																																.	.	.
Query Sequence		R	K	F	I	I	A	.	.	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	.	.	.	I	K	H	L	V	V	A	I	N	K	M	D	L	V	D	Y	S	E	E	T	F	T
Query Conservation								.	.																																																.	.	.
Alig confidence								.	.																																																.	.	.
Template Conservation
Template Sequence		A	A	V	K	A	Q	I	W	D	T	A	G	L	E	R	Y	R	A	I	T	S	A	Y	Y	R	G	A	V	G	A	L	L	V	F	D	L	T	K	H	Q	T	Y	A	V	V	E	R	W	L	K	E	L	Y	D	H	A	E	A	T	I	V	V	M	L	V	G	N	K	S	D	L	S	Q	A	R	E	V	P	T	E
Template Known Secondary structure												S				T	T		T	T						T	T										T	T							T										T	T	S		T	T										G	G	G	G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	D	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	Q	S	E	S	M
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.
Template Sequence		E	A	R	M	F	A	E	N	N	G	.	.	.	.	.	.	.	.	L	L	F	L	E	T	S	A	L	D	S	T	N	V	E	L	A	F	E	T	V
Template Known Secondary structure										T	T	.	.	.	.	.	.	.	.								T	T	T		T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.									.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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