Job Description P23845 Confidence 98.15% Date Thu Jan 5 11:39:52 GMT 2012 Rank 294 Aligned Residues 135 % Identity 16% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50													.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																						.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation							.																																																							.	.	.	.
Template Sequence		T	K	G	N	V	.	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	.	.	.	.	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S
Template Known Secondary structure			S	S			.						S	T	T	S	S															T	T											S	S	S														T		.	.	.	.									S
Template Predicted Secondary structure							.																																																							.	.	.	.
Template SS confidence
		97	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.									.	.
Query SS confidence																											.	.	.	.									.	.
Query Sequence		G	I	T	I	D	V	A	Y	R	Y	F	S	T	E	K	R	K	F	I	I	A	D	T	P	G	.	.	.	.	H	E	Q	Y	T	R	N	M	.	.	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	I	K	H	L	V	V
Query Conservation																											.	.	.	.									.	.
Alig confidence		.	.	.	.	.																					.	.	.	.									.	.																				.
Template Conservation		.	.	.	.	.																																																						.
Template Sequence		.	.	.	.	.	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	.	Q	A	C	E	A	Q	A	K	A	F	K	D	K	V	D	V	A	S	V	I	V
Template Known Secondary structure		.	.	.	.	.									T	T													T	T																		S								T	T			.	T	T
Template Predicted Secondary structure		.	.	.	.	.																																																						.
Template SS confidence
							174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		166	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	N	K	M	D
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	T	K	L	D
Template Known Secondary structure		.	.			T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				248	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions