Job Description P23845 Confidence 97.97% Date Thu Jan 5 11:39:52 GMT 2012 Rank 307 Aligned Residues 136 % Identity 17% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50														.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																						.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation								.																																																							.	.	.
Template Sequence		A	Q	P	P	A	V	.	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	.	.	.	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V
Template Known Secondary structure		S	S	S	S			.						S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T	.	.	.							S	S				T	T
Template Predicted Secondary structure								.																																																							.	.	.
Template SS confidence
		97	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																													.	.	.	.													.	.
Query SS confidence																													.	.	.	.													.	.
Query Sequence		E	Q	G	I	T	I	D	V	A	Y	R	Y	F	S	T	E	K	R	K	F	I	I	A	D	T	P	G	.	.	.	.	H	E	Q	Y	T	R	N	M	A	T	G	A	.	.	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	I	K	H	L
Query Conservation																													.	.	.	.													.	.
Alig confidence							.	.	.	.	.	.																	.	.	.	.													.	.																.
Template Conservation							.	.	.	.	.	.																																																		.
Template Sequence		N	A	A	L	K	.	.	.	.	.	.	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	.	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V
Template Known Secondary structure							.	.	.	.	.	.					T	T		S											S	S																		S								T	T	T	G	.	G	G	G									T	T		S	S
Template Predicted Secondary structure							.	.	.	.	.	.																																																		.
Template SS confidence
		173	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		164	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	A	I	N	K	M	D
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		V	L	.	.	T	K	V	D
Template Known Secondary structure				.	.			S	S
Template Predicted Secondary structure				.	.
Template SS confidence
		246	.			.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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