Job Description P23845 Confidence 98.00% Date Thu Jan 5 11:39:52 GMT 2012 Rank 306 Aligned Residues 136 % Identity 18% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50													.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																						.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation								.																																																							.	.	.	.
Template Sequence		L	K	D	R	N	L	.	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	.	.	.	.	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R
Template Known Secondary structure				S	S			.							T	T	S	S															T	T										S	S																T		.	.	.	.							T	T
Template Predicted Secondary structure								.																																																							.	.	.	.
Template SS confidence
		95	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.					.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																												.	.	.	.									.	.
Query SS confidence																												.	.	.	.									.	.
Query Sequence		Q	G	I	T	I	D	V	A	Y	R	Y	F	S	T	E	K	R	K	F	I	I	A	D	T	P	G	.	.	.	.	H	E	Q	Y	T	R	N	M	.	.	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	I	K	H	L	V
Query Conservation																												.	.	.	.									.	.
Alig confidence			.	.	.	.	.																					.	.	.	.									.	.																				.
Template Conservation			.	.	.	.	.																																																						.
Template Sequence		R	.	.	.	.	.	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	.	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V
Template Known Secondary structure			.	.	.	.	.										T		S										S	S																			S								S	S	S		.	S													S
Template Predicted Secondary structure			.	.	.	.	.																																																						.
Template SS confidence
		170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		165	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	I	N	K	M	D
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		L	.	.	T	K	L	D
Template Known Secondary structure			.	.			S	S
Template Predicted Secondary structure			.	.
Template SS confidence
		244			.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions