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Job DescriptionP23845
Confidence98.59%DateThu Jan 5 11:39:52 GMT 2012
Rank243Aligned Residues157
% Identity19%Templatec2hxsA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:ras-related protein rab-28; PDBTitle: crystal structure of rab28a gtpase in the inactive (gdp-3'p-2 bound) form
Resolution1.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80.........90.........100..
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Query Sequence  QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF
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Template Sequence  SHMRQLKIVVLGDGASGKTSLTTCFAQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ETFGKQYKQTIGLDFFLRRI
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TTSSG.................................GGTTTTTSS
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   8.10.........20.........30.... .....40.........50....
 
   103.... ..110.........120.........130.........140...... ...150.........160.........170...
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Query Sequence  STEKR. . . KFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD. . . . . . QTRRHSFISTLLGIKHLVVAINKMDLV
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Template Sequence  TLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE
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GGGG
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   55....60.........70.........80.........90.........100.........110.........120.........130....
 
   174.....180.........190.........200.........210.........220
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Query Sequence  DYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESM
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Template Sequence  HMRTIKPEKHLRFCQEN. . . . . . . . GFSSHFVSAKTGDSVFLCFQKV
Template Known Secondary structure  GG
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TTT
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   135....140.........150. ........160.........170...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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