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Job DescriptionP23845
Confidence98.28%DateThu Jan 5 11:39:52 GMT 2012
Rank282Aligned Residues152
% Identity22%Templatec2f9lA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:rab11b, member ras oncogene family; PDBTitle: 3d structure of inactive human rab11b gtpase
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  LLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK
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Template Sequence  LFKVVLIGDSGVGKSNLLSRFT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RNEFNLSTIGVEFATRSIQVDGKT
Template Known Secondary structure  SSTTSS..................................S






S
TT
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   11........20.........30.. .......40.........50......
 
   107..110.........120.........130.........140...... ...150.........160.........170.........180...
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Query Sequence  RKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD. . . QTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRI
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Template Sequence  IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEA
Template Known Secondary structure 
SSGGGTT


TT
STT
TS
TT

TT
GGG

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   60.........70.........80.........90.........100.........110.........120.........130.........
 
   184.....190.........200.........210.........220
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Query Sequence  REDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESM
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Template Sequence  RAFAEKNN. . . . . . . . LSFIETSALDSTNVEEAFKNI
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TTT
TT
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   140....... ..150.........160........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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