Job Description P23845 Confidence 100.00% Date Thu Jan 5 11:39:52 GMT 2012 Rank 18 Aligned Residues 372 % Identity 22% Template c1wb1C_ PDB info PDB header:protein synthesis Chain: C: PDB Molecule:translation elongation factor selb; PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp Resolution 3.0 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F	S
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	K	N	I	N	L	G	I	F	G	H	I	D	H	G	K	T	T	L	S	K	V	L	T	E	I	A	S	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	D	K	L	P	E	S	Q	K	R	G	I	T	I	D	I	G	F	S	A	F	K
Template Known Secondary structure				B										T	T	S	S	T	T							T	T	T	S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	S	S	S	T	T	T	T	S						S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																											.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	K	R	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	I	K	H	L	V	V	A	I	N	K	M	D	L	V	D	Y	S	E	E	T	F	T	R	I
Query Conservation
Alig confidence																																																												.												.	.
Template Conservation																																																												.												.	.
Template Sequence		L	E	N	Y	R	I	T	L	V	D	A	P	G	H	A	D	L	I	R	A	V	V	S	A	A	D	I	I	D	L	A	L	I	V	V	D	A	K	E	G	P	K	T	Q	T	G	E	H	M	L	I	L	D	H	F	N	I	P	.	I	I	V	V	I	T	K	S	D	N	A	.	.	G	T	E	E	I	K	R	T
Template Known Secondary structure			T	T									S	S	S										S		S	S										T	T	T																T	T			.									T	T	S	.	.
Template Predicted Secondary structure																																																												.												.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	D	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	Q	S	E	S	M	P	W	Y	S	G	P	T	L	L	E	V	L	E	T	V	E	I	Q	R	V	V	D	A	Q	P	M	R	F	P	V	Q	Y	V	N	R	P	N	L	D	F	R	G	Y
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.
Template Sequence		E	M	I	M	K	S	I	L	Q	S	T	H	N	L	K	N	S	S	I	I	P	I	S	A	K	T	G	F	G	V	D	E	L	K	N	.	.	.	.	.	.	.	.	.	L	I	I	T	T	L	N	N	A	E	I	I	R	N	T	E	S	Y	F	K	M	P	L	D	H	A	F	P	I	K	G	A	G	T	V	V
Template Known Secondary structure												S	S	G	G	G	G								T	T	T	T	T	T							.	.	.	.	.	.	.	.	.							T	T	S							S	S													T	T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.										.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		A	G	T	L	A	S	G	R	V	E	V	G	Q	R	V	K	V	L	P	S	G	V	E	S	N	V	A	R	I	V	T	F	D	G	D	R	E	E	A	F	A	G	E	A	I	T	L	V	L	T	D	.	.	E	I	D	I	S	R	G	D	L	L	L	A	A	D	E	A	L	P	A	V	Q	S	A	S	V	D	V
Query Conservation																																																					.	.
Alig confidence																																																					.	.																.
Template Conservation																																																																						.
Template Sequence		T	G	T	I	N	K	G	I	V	K	V	G	D	E	L	K	V	L	P	I	N	M	S	T	K	V	R	S	I	Q	Y	F	K	E	S	V	M	E	A	K	A	G	D	R	V	G	M	A	I	Q	G	V	D	A	K	Q	I	Y	R	G	I	L	T	S	K	D	T	K	.	L	Q	T	V	D	K	I	V	A	K	I
Template Known Secondary structure							B	S				S	S						T	T	T	T											S	S	S			S				S	S									S	S		G	G	G									T	T			.
Template Predicted Secondary structure																																																																						.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.
		342	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		V	W	M	.	.	A	E	Q	P	L	S	P	G	Q	S	Y	D	I	K	I	A	G	K	K	T	R	A	R	V	D	G	I	R	Y	Q	V	D	I	N	N	L	T	Q	R	E	V	E	N	L	P	L	N	G	I	G	L	V	D	L	T	F	D	E	P	L	V	L	D	R	Y	Q	Q	N	P	V	T	G	G	L	I
Query Conservation					.	.
Alig confidence					.	.																																																								.	.										.	.	.	.	.	.
Template Conservation																																																														.	.										.	.	.	.	.	.
Template Sequence		K	I	S	D	I	F	K	Y	N	L	T	P	K	M	K	V	H	L	N	V	G	M	L	I	V	P	A	V	A	V	P	F	K	K	V	T	F	G	K	T	E	E	N	I	I	L	N	E	V	I	S	G	N	E	Y	A	F	E	L	E	.	.	E	K	V	L	A	E	V	G	D	.	.	.	.	.	.	R	V	L
Template Known Secondary structure			B		T	T			S	B			S	S								T	T																S	S								S			B	S	S	B								.	.							T	T		.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.										.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.							.	.	.
		420		.	.	.	.	.	.	.	.			.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure			.									.	.
Query SS confidence			.									.	.
Query Sequence		F	.	I	D	R	L	S	N	V	T	.	.	V	G	A	G	M	V	H	E	P	V	S	Q	A	T
Query Conservation			.									.	.
Alig confidence			.									.	.
Template Conservation
Template Sequence		I	T	R	L	D	L	P	P	T	T	L	R	I	G	H	G	L	I	E	E	F	K	P	I	K	D
Template Known Secondary structure						S	S		S	S	S														T	G	G
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.