Job Description P23845 Confidence 99.68% Date Thu Jan 5 11:39:52 GMT 2012 Rank 79 Aligned Residues 184 % Identity 18% Template c1udxA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:the gtp-binding protein obg; PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8 Resolution 2.07 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	M	L	I	A	D	V	G	L	V	G	Y	P	N	A	G	K	S	S	L	L	A	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	A	H	P	K	I	A	P	Y	P	F	T	.	.	.	.	.	.	.	.	.	.	.	.	T	L	S	P	N	L	G	V	V
Template Known Secondary structure						S		S							G	G	G										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S								T	T		.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																						.	.	180	.	.	.	.	.	.	.	.	.	190													.	.	.	.	.	.	.	.	.
		103	.		.	.	.	.	.	110	.	.	.	.	.	.								.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure				.													.	.	.	.	.	.	.																																												.	.	.	.
Query SS confidence				.													.	.	.	.	.	.	.																																												.	.	.	.
Query Sequence		S	T	.	E	K	R	K	F	I	I	A	D	T	P	G	.	.	.	.	.	.	.	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	.	.	.	.	I	K	H	L	V	V	A	I	N	K	M
Query Conservation				.													.	.	.	.	.	.	.																																												.	.	.	.
Alig confidence				.													.	.	.	.	.	.	.																																												.	.	.	.
Template Conservation
Template Sequence		E	V	S	E	E	E	R	F	T	L	A	D	I	P	G	I	I	E	G	A	S	E	G	K	G	L	G	L	E	F	L	R	H	I	A	R	T	R	V	L	L	Y	V	L	D	A	A	D	E	P	L	K	T	L	E	T	L	R	K	E	V	G	A	Y	D	P	A	L	L	R	R	P	S	L	V	A	L	N	K	V
Template Known Secondary structure				S	S	S															G	G	G	S			S									T	S	S	S								T	T	S																							S
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	V	D	Y	S	E	E	T	F	T	R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	D	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	Q	S	E	S	M	P	W	Y	S	G	P	T	L	L	E	V	L	E	T	V	E	I	Q	R	V	V	D	A	Q	P	M	R	F	P	V
Query Conservation
Alig confidence						.	.	.	.	.	.																	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.																	.	.	.	.																				.	.	.	.	.	.	.	.
Template Sequence		D	L	L	E	.	.	.	.	.	.	E	E	A	V	K	A	L	A	D	A	L	A	R	E	G	L	.	.	.	.	A	V	L	P	V	S	A	L	T	G	A	G	L	P	A	L	K	E	A	.	.	.	.	.	.	.	.	L	H	A	L	V	R	S	T	P	P	P	E	M	P	K	P	V	P	Q	A	G	V	E
Template Known Secondary structure		T	T	S		.	.	.	.	.	.													T	T	T	S	.	.	.	.							T	T	T		T	T								.	.	.	.	.	.	.	.							T	S
Template Predicted Secondary structure						.	.	.	.	.	.																	.	.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.							.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.					300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.									.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		251	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	V	N	R	P	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	P	V	A	E	G
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions