Job Description P23845 Confidence 100.00% Date Thu Jan 5 11:39:52 GMT 2012 Rank 4 Aligned Residues 400 % Identity 30% Template c1skqB_ PDB info PDB header:translation Chain: B: PDB Molecule:elongation factor 1-alpha; PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp Resolution 1.80 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F	S	T
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	H	L	N	L	I	V	I	G	H	V	D	H	G	K	S	T	L	V	G	R	L	L	M	D	R	G	F	I	D	E	K	T	V	K	E	A	E	E	A	A	K	K	L	G	K	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	F	A	F	L	L	D	R	L	K	E	E	M	R	F	E	T
Template Known Secondary structure												S	T	T	S	S													B				S	S												T	T		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.												T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.														.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.								.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.																															.	.
Query SS confidence																																									.	.	.	.	.	.	.																															.	.
Query Sequence		E	K	R	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	.	.	.	.	.	.	.	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	I	K	H	L	V	V	A	I	N	K	M	D	L	V	.	.	D	Y
Query Conservation																																									.	.	.	.	.	.	.																															.	.
Alig confidence																																									.	.	.	.	.	.	.																															.	.
Template Conservation
Template Sequence		K	K	Y	F	F	T	I	I	D	A	P	G	H	R	D	F	V	K	N	M	I	T	G	A	S	Q	A	D	A	A	I	L	V	V	S	A	K	K	G	E	Y	E	A	G	M	S	V	E	G	Q	T	R	E	H	I	I	L	A	K	T	M	G	L	D	Q	L	I	V	A	V	N	K	M	D	L	T	E	P	P	Y
Template Known Secondary structure		S	S									T	T	S	T	T								S	S	S			S									S	T	T						S	S	S	S													T	T											G	G	G	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		S	E	E	T	F	T	R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	.	D	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	Q	S	E	S	M	P	W	Y	S	G	P	T	L	L	E	V	L	E	T	V	E	I	Q	R	V	V	D	A	Q	P	M	R	F	P	V	Q	Y	V	N
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		D	E	K	R	Y	K	E	I	V	D	Q	V	S	K	F	M	R	S	Y	G	F	N	T	N	K	V	R	F	V	P	V	V	A	P	S	G	D	N	I	T	H	K	S	E	N	M	K	W	Y	N	G	P	T	L	E	E	Y	L	D	Q	L	E	L	P	P	K	P	V	D	K	P	L	R	I	P	I	Q	D	V	Y
Template Known Secondary structure																				T	T				T	T							B	T	T	T	T	B	T	T	T	B			S	T	T	T	T			S									T							G	G	G	S			B
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		R	P	N	L	D	F	R	G	Y	A	G	T	L	A	S	G	R	V	E	V	G	Q	R	V	K	V	L	P	S	G	V	E	S	N	V	A	R	I	V	T	F	D	G	D	R	E	E	A	F	A	G	E	A	I	T	L	V	L	T	.	.	D	E	I	D	I	S	R	G	D	L	L	L	A	A	D	E	A	L	P
Query Conservation																																																													.	.
Alig confidence																																																													.	.
Template Conservation
Template Sequence		S	I	S	G	V	G	T	V	P	V	G	R	V	E	S	G	V	L	K	V	G	D	K	I	V	F	M	P	A	G	K	V	G	E	V	R	S	I	E	T	H	H	T	K	M	D	K	A	E	P	G	D	N	I	G	F	N	V	R	G	V	E	K	K	D	I	K	R	G	D	V	V	G	H	P	N	N	P	P	T
Template Known Secondary structure				T	T	T										B	S				T	T							T	T	T											S	S				S				T	T									S			G	G	G			T	T					B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		333	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.			.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.																																						.	.
Query SS confidence														.																																						.	.
Query Sequence		A	V	Q	S	A	S	V	D	V	V	W	M	.	A	E	Q	P	L	S	P	G	Q	S	Y	D	I	K	I	A	G	K	K	T	R	A	R	V	D	G	I	R	Y	Q	V	D	I	N	N	L	T	.	.	Q	R	E	V	E	N	L	P	L	N	G	I	G	L	V	D	L	T	F	D	E	P	L	V	L	D	R	Y
Query Conservation														.																																						.	.
Alig confidence														.																																						.	.
Template Conservation
Template Sequence		V	A	D	E	F	T	A	R	I	I	V	V	W	H	P	T	A	L	A	N	G	Y	T	P	V	L	H	V	H	T	A	S	V	A	C	R	V	S	E	L	V	S	K	L	D	P	R	T	G	Q	E	A	E	K	N	P	Q	F	L	K	Q	G	D	V	A	I	V	K	F	K	P	I	K	P	L	C	V	E	K	Y
Template Known Secondary structure																S	S		B		T	T								T	T																T	T	T							S		S		B		T	T										S	S							T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	N	P	V	T	G	G	L	I	F	I	D	R	L	S	N	V	T	V	G	A	G	M	V	H	E	P	V	S
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		N	E	F	P	P	L	G	R	F	A	M	R	D	.	.	M	G	K	T	V	G	V	G	I	I	V	D	V	K	P
Template Known Secondary structure		T	T		G	G	G	S							.	.	T	T
Template Predicted Secondary structure															.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.			.	.	.	.	.	420	.	.	.	.	.	.	.	.	.