Job Description P23845 Confidence 100.00% Date Thu Jan 5 11:39:52 GMT 2012 Rank 17 Aligned Residues 358 % Identity 19% Template c1s0uA_ PDB info PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: eif2gamma apo Resolution 2.40 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F	S
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	A	E	V	N	I	G	M	V	G	H	V	D	H	G	K	T	S	L	T	K	A	L	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	W	T	D	R	G	I	S	I	R	L	G	Y	A	D	C	E	I	R	K	C	P	Q	C	G	T	Y	T	T	K	P	R	C	P	N	C	L	A	E
Template Known Secondary structure												S		T	T	S	S										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						T	T	T					S	S	S	B		T	T	S			B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.																60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		104		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure			.																																									.
Query SS confidence			.																																									.
Query Sequence		T	.	E	K	R	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	.	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	I	K	H	L	V	V	A	I	N	K	M	D	L	V	D	Y	S	E	E	T	F	T
Query Conservation			.																																									.
Alig confidence			.																																									.																														.	.
Template Conservation																																																																										.	.
Template Sequence		T	E	F	L	R	R	V	S	F	V	D	S	P	G	H	E	T	L	M	A	T	M	L	S	G	A	S	L	M	D	G	A	I	L	V	I	A	A	N	E	P	C	P	Q	P	Q	T	K	E	H	L	M	A	L	E	I	L	G	I	D	K	I	I	I	V	Q	N	K	I	D	L	V	.	.	D	E	K	Q	A	E
Template Known Secondary structure														S	S										T	T		S			S								T	T	S		S	S														T	T											T	T	S	S	.	.		T	T	T	T	T
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	D	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	Q	S	E	S	M	P	W	Y	S	G	P	T	L	L	E	V	L	E	T	V	E	I	Q	R	V	V	D	A	Q	P	M	R	F	P	V	Q	Y	V	N	R	P	N	L	D	F	R
Query Conservation
Alig confidence																	.																											.	.	.	.	.	.	.	.	.
Template Conservation																	.																											.	.	.	.	.	.	.	.	.
Template Sequence		E	N	Y	E	Q	I	K	E	F	V	K	G	T	I	A	.	E	N	A	P	I	I	P	I	N	I	D	V	L	L	K	A	I	Q	D	F	I	P	T	P	K	R	.	.	.	.	.	.	.	.	.	D	P	D	A	T	P	R	M	Y	V	A	R	S	F	D	I	N	K	P	G	T	E	I	K	D	L	K	G	G
Template Known Secondary structure		T										T	T	S	T	T	.	T	T																			S						.	.	.	.	.	.	.	.	.		T	T	S															S	S			G	G	G
Template Predicted Secondary structure																	.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.										.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.													.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.						.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query Sequence		G	Y	A	G	T	L	A	S	G	R	V	E	V	G	Q	R	V	K	V	L	P	S	G	V	.	.	.	.	.	.	.	.	.	.	.	.	E	S	N	V	A	R	I	V	T	F	D	G	D	R	E	E	A	F	A	G	E	A	I	T	L	V	L	T	.	.	.	.	.	D	E	I	D	I	S	R	G	D	L	L
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence		V	L	G	G	A	I	I	Q	G	V	F	K	V	G	D	E	I	E	I	R	P	G	I	K	V	T	E	G	N	K	T	F	W	K	P	L	T	T	K	I	V	S	L	A	A	G	N	T	I	L	R	K	A	H	P	G	G	L	I	G	V	G	T	T	L	D	P	Y	L	T	K	S	D	A	L	T	G	S	V	V
Template Known Secondary structure										S				T	T														T	T																	T	T				S				S	S	S							S	S		G	G	G	T	G	G	G	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.											.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	A	D	E	A	L	P	A	V	Q	S	A	S	V	D	V	V	W	M	A	E	.	.	.	.	.	.	.	.	.	.	Q	P	L	S	P	G	Q	S	Y	D	I	K	I	A	G	K	K	T	R	A	R	V	D	G	I	R	Y	Q	V	D	I	N	N	L	T	Q	R	E	V	E	N	L	P	L	N	G	I	G
Query Conservation																								.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	P	G	T	L	P	P	I	R	E	K	I	T	I	R	A	N	L	L	D	R	V	V	G	T	K	E	E	L	K	I	E	P	L	R	T	G	E	V	L	M	L	N	I	G	T	A	T	T	A	G	V	I	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	G	D
Template Known Secondary structure			S	T	T		S																		S	S		S	S	T	T							T	T								T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.																					.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.			.	.	.	.	430	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		L	V	D	L	T	F	D	E	P	L	V	L	D	R	Y	Q	Q	N	P	V	T	G	G	L	I	F	I	D	R	L	S	.	.	N	V	T	V	G	A	G	M	V
Query Conservation																																	.	.
Alig confidence																		.	.	.	.	.	.										.	.
Template Conservation																		.	.	.	.	.	.
Template Sequence		I	A	D	I	K	L	K	L	P	I	C	A	E	I	G	D	.	.	.	.	.	.	R	V	A	I	S	R	R	V	G	S	R	W	R	L	I	G	Y	G	T	I
Template Known Secondary structure															T	T		.	.	.	.	.	.									S	S	S
Template Predicted Secondary structure																		.	.	.	.	.	.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.							.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.