Job Description P23845 Confidence 100.00% Date Thu Jan 5 11:39:52 GMT 2012 Rank 9 Aligned Residues 387 % Identity 27% Template c1r5nA_ PDB info PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp- PDBTitle: crystal structure analysis of sup35 complexed with gdp Resolution 2.90 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	Q	I	A	N	E	G	G	V	E	A	W	M	I	A	Q	Q	H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L
Query Conservation
Alig confidence											.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	D	L	Q	N	E	V	D	.	Q	E	L	L	K	D	M	Y	G	K	E	H	V	N	I	V	F	I	G	H	V	D	A	G	K	S	T	L	G	G	N	I	L	F	L	T	G	M	V	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S		S	S	G	G	G		S	.	S	S				S	S	S													T	T	S	S												T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.								.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F	S	T	E	K	R	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	.	.	.	.	.	.	.	Q	T	R	R	H	S	F	I	S	T	L	L
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence		.	.																																	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation		.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	R	T	M	E	K	I	E	R	E	A	K	R	A	Y	F	E	T	E	H	R	R	F	S	L	L	D	A	P	G	A	S	Q	.	.	.	.	.	.	.	.	.	.	.	A	D	I	G	V	L	V	I	S	A	R	R	G	E	F	E	A	G	F	E	R	G	G	Q	T	R	E	H	A	V	L	A	R	T	Q
Template Known Secondary structure		.	.																		S	S											T	T	S	.	.	.	.	.	.	.	.	.	.	.		S									S	T	T					T	T	S	S	S													T
Template Predicted Secondary structure		.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.												300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																	.	.																								.	.	.																					.	.
Query SS confidence																	.	.																								.	.	.																					.	.
Query Sequence		G	I	K	H	L	V	V	A	I	N	K	M	D	L	V	.	.	D	Y	S	E	E	T	F	T	R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	.	.	.	N	L	D	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	Q	.	.	S	E	S	M	P	W	Y	S	G	P	T	L	L	E	V
Query Conservation																	.	.																								.	.	.																					.	.
Alig confidence																	.	.																								.	.	.																					.	.
Template Conservation
Template Sequence		G	I	N	H	L	V	V	V	I	N	K	M	D	E	P	S	V	Q	W	S	E	E	R	Y	K	E	C	V	D	K	L	S	M	F	L	R	R	V	A	G	Y	N	S	K	T	D	V	K	Y	M	P	V	S	A	Y	T	G	Q	N	V	K	D	R	V	D	S	S	V	C	P	W	Y	Q	G	P	S	L	L	E	Y
Template Known Secondary structure		T		S	S								S	S	S	T	T		S	S																								T	T	T	T							B	T	T	T	T	B	T	T	S	S				T	T	T		T	T			S
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		L	E	T	V	E	I	Q	R	V	V	D	A	Q	P	M	R	F	P	V	Q	Y	V	N	R	P	N	L	D	F	R	G	Y	A	G	T	L	A	S	G	R	V	E	V	G	Q	R	V	K	V	L	P	S	G	V	E	S	N	V	A	R	I	V	T	.	F	D	G	D	R	E	E	A	F	A	G	E	A	I	T	L
Query Conservation																																																																	.
Alig confidence																										.	.																																						.
Template Conservation																										.	.
Template Sequence		L	D	S	M	T	H	L	E	R	K	V	N	A	P	F	I	M	P	I	A	S	K	Y	K	.	.	D	L	G	T	I	L	E	G	K	I	E	A	G	S	I	K	K	N	S	N	V	L	V	M	P	I	N	Q	T	L	E	V	T	A	I	Y	D	E	A	D	E	E	I	S	S	S	I	C	G	D	Q	V	R	L
Template Known Secondary structure													T	S												.	.	S	S	S									B	S				S	S							T	T	T											T	T					S				T	T
Template Predicted Secondary structure																										.	.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.			.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
		311	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.
Predicted Secondary structure						.																															.																																						.
Query SS confidence						.																															.																																						.
Query Sequence		V	L	T	D	.	E	I	D	I	S	R	G	D	L	L	L	A	A	D	E	A	L	P	A	V	Q	S	A	S	V	D	V	V	W	M	.	A	E	Q	P	L	S	P	G	Q	S	Y	D	I	K	I	A	G	K	K	T	R	A	R	V	D	G	I	R	Y	Q	V	D	I	N	N	L	T	.	Q	R	E	V	E	N
Query Conservation						.																															.																																						.
Alig confidence						.																															.																																						.
Template Conservation
Template Sequence		R	V	R	G	D	D	S	D	V	Q	T	G	Y	V	L	T	S	T	K	N	P	V	H	A	T	T	R	F	I	A	Q	I	A	I	L	E	L	P	S	I	L	T	T	G	Y	S	C	V	M	H	I	H	T	A	V	E	E	V	S	F	A	K	L	L	H	K	L	D	K	T	N	R	K	S	K	K	P	P	M	F
Template Known Secondary structure					S			S	S			T	T						S	S	S															S	S					B	S	S								S	S	S																S	S					S	S			S	B
Template Predicted Secondary structure
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	L	N	G	I	G	L	V	D	L	T	F	D	E	P	L	V	L	D	R	Y	Q	Q	N	P	V	T	G	G	L	I	F	I	D	R	L	S	N	V	T	V	G	A	G	M	V	H	E	P	V	S
Query Conservation
Alig confidence																																					.	.
Template Conservation																																					.	.
Template Sequence		A	T	K	G	M	K	I	I	A	E	L	E	T	Q	T	P	V	C	M	E	R	F	E	D	Y	Q	Y	M	G	R	F	T	L	R	D	.	.	Q	G	T	T	V	A	V	G	K	V	V	K	I	L	D
Template Known Secondary structure				T	T																		T	T	T		G	G	G	G							.	.	T	T
Template Predicted Secondary structure																																					.	.
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.			.	.	650	.	.	.	.	.	.	.	.	.	660	.	.