Job Description P23845 Confidence 100.00% Date Thu Jan 5 11:39:52 GMT 2012 Rank 15 Aligned Residues 363 % Identity 21% Template c1kk3A_ PDB info PDB header:translation Chain: A: PDB Molecule:eif2gamma; PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+ Resolution 1.90 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		H	K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	.	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F
Query Conservation																																																						.
Alig confidence																												.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Q	A	E	V	N	I	G	M	V	G	H	V	D	H	G	K	T	T	L	T	K	A	L	T	G	.	.	.	.	.	.	.	.	.	.	V	W	T	D	S	E	E	L	R	R	G	I	T	I	K	I	G	F	A	D	A	E	I	R	R	C	P	N	C	G	R	Y	S	T	S	P	V	C	P	Y	C	G	H	E
Template Known Secondary structure			S									S	S	T	T	S	S										T	.	.	.	.	.	.	.	.	.	.							T	T	S	S		S	S	S													T	T	T					S	S	S	B		T	T	T			B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.											.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		S	T	E	K	R	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	.	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	I	K	H	L	V	V	A	I	N	K	M	D	L	V	D	Y	S	E	E	T	F	T
Query Conservation																																												.
Alig confidence																																												.																														.	.
Template Conservation																																																																										.	.
Template Sequence		T	E	F	V	R	R	V	S	F	I	D	A	P	G	H	E	A	L	M	T	T	M	L	A	G	A	S	L	M	D	G	A	I	L	V	I	A	A	N	E	P	C	P	R	P	Q	T	R	E	H	L	M	A	L	Q	I	I	G	Q	K	N	I	I	I	A	Q	N	K	I	E	L	V	.	.	D	K	E	K	A	L
Template Known Secondary structure														S	S												G	G	G		S								T	T	S		S																T											G	G	G	S	.	.
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		R	I	R	E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	D	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	Q	S	E	S	M	P	W	Y	S	G	P	T	L	L	E	V	L	E	T	V	E	I	Q	R	V	V	D	A	Q	P	M	R	F	P	V	Q	Y	V	N	R	P	N	L	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																	.																				.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Conservation																	.																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	Y	R	Q	I	K	E	F	I	E	G	T	V	A	.	E	N	A	P	I	I	P	I	S	A	L	H	G	A	N	I	D	V	L	.	.	.	.	.	.	.	.	.	.	.	V	K	A	I	E	D	F	I	P	T	P	K	R	D	P	N	K	P	P	K	M	L	V	L	R	S	F	D	V	N	K	P	G	E
Template Known Secondary structure												T	T	S	T	T	.	T	T							B	T	T	T	T	B	T					.	.	.	.	.	.	.	.	.	.	.								S							T	T	S													S
Template Predicted Secondary structure																	.																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190												.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
				259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.													.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.						.	.	.	.	.	.
Predicted Secondary structure		.	.																										.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Query SS confidence		.	.																										.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Query Sequence		.	.	D	F	R	G	Y	A	G	T	L	A	S	G	R	V	E	V	G	Q	R	V	K	V	L	P	S	.	.	.	.	.	.	.	.	.	.	.	.	G	V	E	S	N	V	A	R	I	V	T	F	D	G	D	R	E	E	A	F	A	G	E	A	I	T	L	V	L	T	.	.	.	.	.	D	E	I	D	I	S
Query Conservation		.	.																										.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Alig confidence		.	.																										.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template Conservation
Template Sequence		K	L	V	G	G	V	L	G	G	S	I	V	Q	G	K	L	K	V	G	D	E	I	E	I	R	P	G	V	P	Y	E	E	H	G	R	I	K	Y	E	P	I	T	T	E	I	V	S	L	Q	A	G	G	Q	F	V	E	E	A	Y	P	G	G	L	V	G	V	G	T	K	L	D	P	Y	L	T	K	G	D	L	M
Template Known Secondary structure															S				T	T														T	T																	T	T				S				S	S	S							S	S		G	G	G	T	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.									.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.
Query Sequence		R	G	D	L	L	L	A	A	D	E	A	L	P	A	V	Q	S	A	S	V	D	V	V	W	M	A	.	.	.	.	.	.	.	.	E	Q	P	L	S	P	G	Q	S	Y	D	I	K	I	A	G	K	K	T	R	A	R	V	D	G	I	R	Y	Q	V	D	I	N	N	L	T	Q	R	E	V	E	N	L	P	L	N
Query Conservation																												.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	N	V	V	G	K	P	G	K	L	P	P	V	W	D	S	L	R	L	E	V	H	L	L	E	R	V	V	E	Q	E	L	K	V	E	P	I	K	R	K	E	V	L	L	L	N	V	G	T	A	R	T	M	G	L	V	T	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T						T	T		S																							S						T	T								T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		G	I	G	L	V	D	L	T	F	D	E	P	L	V	L	D	R	Y	Q	Q	N	P	V	T	G	G	L	I	F	I	D	R	.	.	L	S	N	V	T	V	G	A	G	M	V	H	E
Query Conservation																																		.	.
Alig confidence																					.	.	.	.	.	.								.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		G	K	D	E	I	E	V	K	L	Q	I	P	V	C	A	E	P	G	D	.	.	.	.	.	.	R	V	A	I	S	R	Q	I	G	S	R	W	R	L	I	G	Y	G	I	I	K	E
Template Known Secondary structure			T	T														T	T		.	.	.	.	.	.									T	T
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.							.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410