Job Description P23845 Confidence 100.00% Date Thu Jan 5 11:39:52 GMT 2012 Rank 11 Aligned Residues 379 % Identity 24% Template c1d2eA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:elongation factor tu (ef-tu); PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp Resolution 1.94 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	L	L	R	F	L	T	C	G	S	V	D	D	G	K	S	T	L	I	G	R	L	L	H	D	T	R	Q	I	Y	E	D	Q	L	S	S	L	H	N	D	S	K	R	H	G	T	Q	G	E	K	L	D	L	A	L	L	V	D	G	L	Q	A	E	R	E	Q	G	I	T	I	D	V	A	Y	R	Y	F	S	T
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	K	I	L	A	E	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	K	F	K	K	Y	E	E	I	D	N	A	P	E	E	R	A	R	G	I	T	I	N	A	A	H	V	E	Y	S	T
Template Known Secondary structure											S	S	T	T	S	S															T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B										S							T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.																		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	R	K	F	I	I	A	D	T	P	G	H	E	Q	Y	T	R	N	M	A	T	G	A	S	T	C	E	L	A	I	L	L	I	D	A	R	K	G	V	L	D	Q	T	R	R	H	S	F	I	S	T	L	L	G	I	K	H	L	V	V	A	I	N	K	M	D	L	V	D	Y	S	E	E	T	F	T	R	I	R
Query Conservation
Alig confidence																																																																										.
Template Conservation																																																																										.
Template Sequence		A	A	R	H	Y	A	H	T	D	C	P	G	H	A	D	Y	V	K	N	M	I	T	G	T	A	P	L	D	G	C	I	L	V	V	A	A	N	D	G	P	M	P	Q	T	R	E	H	L	L	L	A	R	Q	I	G	V	E	H	V	V	V	Y	V	N	K	A	D	A	V	Q	D	S	.	E	M	V	E	L	V	E
Template Known Secondary structure		S	S									S	S											T	S	S			S								T	T	T		S														T	T											G	G	G		S			.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																.																																									.
Query SS confidence																.																																									.
Query Sequence		E	D	Y	L	T	F	A	G	Q	L	P	G	N	L	.	D	I	R	F	V	P	L	S	A	L	E	G	D	N	V	A	S	Q	S	E	S	M	P	W	Y	S	G	P	T	L	L	E	V	L	E	T	V	E	I	Q	.	R	V	V	D	A	Q	P	M	R	F	P	V	Q	Y	V	N	R	P	N	L	D	F	R	G
Query Conservation																.																																									.
Alig confidence																.																			.	.																					.
Template Conservation																																			.	.
Template Sequence		L	E	I	R	E	L	L	T	E	F	G	Y	K	G	E	E	T	P	I	I	V	G	S	A	L	C	A	L	E	Q	R	D	P	.	.	E	L	G	L	K	S	V	Q	K	L	L	D	A	V	D	T	Y	I	P	V	P	T	R	D	L	E	K	P	F	L	L	P	V	E	S	V	Y	S	I	P	G	R	G	T	V
Template Known Secondary structure											T	T	S		T	T	T	S												T	T			T	.	.	T	T	T															S							T	T	S													T	T	T
Template Predicted Secondary structure																																			.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																														.	.
Query SS confidence																									.	.																														.	.
Query Sequence		Y	A	G	T	L	A	S	G	R	V	E	V	G	Q	R	V	K	V	L	P	S	G	V	.	.	E	S	N	V	A	R	I	V	T	F	D	G	D	R	E	E	A	F	A	G	E	A	I	T	L	V	L	T	D	.	.	E	I	D	I	S	R	G	D	L	L	L	A	A	D	E	A	L	P	A	V	Q	S	A	S
Query Conservation																									.	.																														.	.
Alig confidence																									.	.																														.	.																.
Template Conservation																																																																									.
Template Sequence		V	T	G	T	L	E	R	G	I	L	K	K	G	D	E	C	E	F	L	G	H	S	K	N	I	R	T	V	V	T	G	I	E	M	F	H	K	S	L	D	R	A	E	A	G	D	N	L	G	A	L	V	R	G	L	K	R	E	D	L	R	R	G	L	V	M	A	K	P	G	S	.	I	Q	P	H	Q	K	V	E
Template Known Secondary structure								B	S				T	T								T	T													T	T				S				T	T								S	S			G	G	G			T	T					S	T	T	S	.
Template Predicted Secondary structure																																																																									.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.
		339	340	.	.	.	.							.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure								.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.
Query Sequence		V	D	V	V	W	M	.	.	.	.	.	.	A	E	Q	P	L	S	P	G	Q	S	Y	D	I	K	I	A	G	K	K	T	R	A	R	V	D	G	I	R	Y	Q	V	D	I	N	N	L	T	Q	R	E	V	E	N	L	P	L	N	G	I	G	L	V	D	L	T	F	D	E	P	L	V	L	D	R	Y	Q	Q	N
Query Conservation								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Sequence		A	Q	V	Y	I	L	T	K	E	E	G	G	R	H	K	P	F	V	S	H	F	M	P	V	M	F	S	L	T	W	D	M	A	C	R	I	I	L	P	.	.	.	.	.	.	.	.	.	.	.	P	G	K	E	L	A	M	P	G	E	D	L	K	L	T	L	I	L	R	Q	P	M	I	L	E	K	G	Q	.	.
Template Known Secondary structure									G	G	G	T	S		S	S		B		T	T								T	T											.	.	.	.	.	.	.	.	.	.	.	S	S				B		T	T																	T	T		.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.																													.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.												.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	T	G	G	L	I	F	I	D	R	L	S	N	V	T	V	G	A	G	M	V	H	E	P	V	S	Q	A	T	A
Query Conservation
Alig confidence		.	.	.	.							.	.
Template Conservation		.	.	.	.							.	.
Template Sequence		.	.	.	.	R	F	T	L	R	D	.	.	G	N	R	T	I	G	T	G	L	V	T	D	T	P	A	M	T	E	E
Template Known Secondary structure		.	.	.	.							.	.	T	T
Template Predicted Secondary structure		.	.	.	.							.	.
Template SS confidence
						421	.	.	.	.	.			.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.