 |
Job Description | P0A6C5 | Confidence | 98.03% | Date | Thu Jan 5 11:02:49 GMT 2012 |
Rank | 186 | Aligned Residues | 105 |
% Identity | 16% | Template | c3p2fA_ |
PDB info |
PDB header:signaling protein | Chain: A: PDB Molecule:ahl synthase; |
PDBTitle: crystal structure of tofi in an apo form
|
Resolution | 2.30 Å |
|
 |
  |   |
302 | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | |
. | . | . | . | . | . | . | . | 350 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 360 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  | . |  |
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
T | I | N | D | I | G | G | I | L | E | L | I | R | P | L | E | Q | Q | G | I | L | V | R | R | S | R | E | Q | L | E | M | E | I | D | K | F | T | I | I | Q | . |
R | D | N | T | T | I | A | C | A | A | L | Y | P | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | E | E | K | I | G |
Query Conservation |   |
  |   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |
|   |
|   |   |   |
|   |   |   |   |
|
|
| . |   |
|
|   |
|
|
|   |   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|
|   |   |
|
|
|   |
|   | . | . |
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |
|
|   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
P | A | H | I | A | A | E | L | G | S | Y | R | Y | R | V | F | V | E | Q | L | . |
. |
K | M | E | R | D | Q | Y | D | R | D | D | T | V | Y | V | L | G | R | D | A | N | G | E | I | C | G | C | A | R | L | L | P | T | T | R | P | Y | L | L | Q | E | V | F | P | H | L | L | A | D | E | A | P | R | S | A | H | V | W |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| . | . |
|
|
|
|
| T | T |
|
| T | T |
|  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |  | T | T | S |
|
|  |  |  |  |  |
| G | G | G |
| S | S |
|
|
|
|
| T | T |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | |
|
. | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
  |
  |   |
362 | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | |
. | . | . | . | . | . | . | 410 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | M | A | C | V | A | V | H | P | D | Y | R | S | S | S | R | G | E | V | L | L | E | R | I | A | A | Q | A | K | Q | S | G | L | S | K | L | F | V | L | T | T | . |
R | S | I | H | W | F | Q | E | R | G | F |
Query Conservation |   |
  |
|   |   |
|   |
|   |
|   |   |
|
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|
|
|   | . |   |
|   |   |   |
|   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|   |   |   |   |
| . | . | . | . | . |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |
|   |   |   |   |
|   |
|   |
|   |
|   |
|   |
Template Sequence |   |
E | L | S | R | F | A | A | T | A | W | S | V | . |
. |
. |
. |
. |
R | P | M | L | A | A | A | V | E | C | A | A | R | R | G | A | R | Q | L | I | G | V | T | F | C | S | M | E | R | M | F | R | R | I | G | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
|
| T | T |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
101 | . | . | . | . | . | . | . | . | 110 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|