Job Description P52073 Confidence 100.00% Date Thu Jan 5 12:05:09 GMT 2012 Rank 4 Aligned Residues 342 % Identity 21% Template c3pm9A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution Resolution 2.57 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		C	D	Y	S	Q	A	L	L	E	Q	V	N	Q	A	I	S	D	K	T	P	L	V	I	Q	G	S	N	S	K	A	F	L	G	R	P	V	.	.	T	G	Q	T	L	D	V	R	C	H	R	G	I	V	N	Y	D	P	T	E	L	V	I	T	A	R	V	G	T	P	L	V	T	I	E	A	A	L	E	S	A	G
Query Conservation																																						.	.
Alig confidence																																						.	.
Template Conservation
Template Sequence		P	G	S	T	E	E	V	V	A	I	C	K	L	A	N	E	A	R	V	A	L	V	P	Q	G	G	N	T	G	L	V	G	G	Q	T	P	H	N	G	E	V	V	I	S	L	K	R	X	D	K	I	R	E	I	D	T	S	S	N	T	I	T	V	E	A	G	A	I	L	Q	R	V	Q	E	K	A	A	E	V	D
Template Known Secondary structure				S															T							S	S	S			S	S	S	T	T				S	S							T	T									T	T	T	T						T	T		B											T	T
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	L	P	C	E	P	P	H	Y	G	E	E	A	T	W	G	G	M	V	A	C	G	L	A	G	P	R	R	P	W	S	G	S	V	R	D	F	V	L	G	T	R	I	I	T	G	A	G	K	H	L	R	F	G	G	E	V	M	K	N	V	A	G	Y	D	L	S	R	L	M	V	G	S	Y	G	C	L	G	V
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		R	L	F	P	L	S	L	G	A	Q	.	G	S	C	T	I	G	G	N	L	S	T	N	A	G	G	T	A	A	L	A	Y	G	L	A	R	D	X	A	L	G	V	E	V	V	L	A	D	G	R	V	X	N	L	L	S	K	L	K	K	D	N	T	G	Y	D	L	R	D	L	F	I	G	A	E	G	T	L	G	I
Template Known Secondary structure									T	T	T	.	T	T		B								T				T	T																			T	T	S										S				S	S								T	T	S	T	T	S	S
Template Predicted Secondary structure												.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.																									200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	E	I	S	M	K	V	L	P	R	P	R	A	S	L	S	L	R	R	E	I	S	L	Q	E	A	M	S	E	I	A	E	W	Q	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	P	I	S	G	L	C	Y	F	D	N	A	L	W	I	R	L	E
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	A	A	T	L	K	L	F	P	K	P	R	A	V	E	T	A	F	V	G	L	Q	S	P	D	D	A	L	K	L	L	G	I	A	Q	G	E	A	A	G	N	L	T	S	F	E	L	I	A	E	T	P	L	D	F	S	V	R	H	A	N	N	R	D	P	L	E	A	R	Y	P	W	Y	V	L	I	E	L	S
Template Known Secondary structure														S										S																	G	G	G																			T	T					S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.																	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.															.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.															.	.	.
Query Sequence		G	G	E	G	S	V	K	A	A	R	E	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	E	E	V	A	G	Q	F	W	Q	Q	L	R	E	Q	Q	L	P	F	F	S	L	P	G	T	L	W	.	R	I	S	L	P	S	D	A	P	M	M	D	L	P	.	.	.	G	E	Q	L	I
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.															.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.															.	.	.
Template Conservation
Template Sequence		S	P	R	D	D	A	R	A	A	L	E	S	I	L	E	R	G	F	E	D	G	I	V	V	D	A	A	I	A	N	S	V	Q	Q	Q	Q	A	F	W	K	L	R	E	E	I	S	P	A	Q	K	P	E	G	G	S	I	K	H	D	I	S	V	P	V	A	A	V	P	Q	F	I	E	Q	A	N	A	A	V	V	A
Template Known Secondary structure			S	S	S																T	T										S													T					T	G	G	G												G	G	G
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.																											.	.	.	.	.	300	.	.	.	.	.						.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query Sequence		D	W	G	G	A	L	R	W	L	K	S	T	A	E	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	H	R	I	A	R	N	A	G	G	.	.	.	.	.	H	A	T	R	F	S	A	G	D	G	G	F	A	P	L	S	A	P	L	F	R	Y
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Conservation
Template Sequence		L	I	P	G	A	R	P	V	P	F	G	H	L	G	D	G	N	I	H	Y	N	V	S	Q	P	V	G	A	D	K	A	E	F	L	A	R	W	H	D	V	S	Q	V	V	F	E	V	V	L	R	L	G	G	S	I	S	A	E	H	G	I	G	V	X	K	R	D	E	L	A	E	V	K	D	K	T	A	I	E	L
Template Known Secondary structure			S	T	T									G	G	G	T										T	T								T	T															T	T		B	S		S	S	S			T	T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	Q	L	K	Q	Q	L	D	P	C	G	V	F	N	P	G	R	M	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	R	S	I	K	A	L	L	D	P	H	G	I	X	N	P	G	K	V	V
Template Known Secondary structure											T	T	S		B	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions