Job Description P52073 Confidence 100.00% Date Thu Jan 5 12:05:09 GMT 2012 Rank 12 Aligned Residues 324 % Identity 15% Template c2vfvA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:xylitol oxidase; PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite Resolution 1.72 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		E	C	D	Y	S	Q	A	L	L	E	Q	V	N	Q	A	I	S	D	K	T	P	L	V	I	Q	G	S	N	S	K	A	F	L	G	R	P	V	.	.	T	G	Q	T	L	D	V	R	C	H	R	G	I	V	N	Y	D	P	T	E	L	V	I	T	A	R	V	G	T	P	L	V	T	I	E	A	A	L	E	S	A
Query Conservation																																							.	.
Alig confidence																		.	.	.	.																		.	.
Template Conservation																		.	.	.	.
Template Sequence		R	P	H	S	L	D	A	L	R	A	L	V	A	D	S	A	.	.	.	.	R	V	R	V	L	G	S	G	H	S	F	N	E	I	A	E	P	G	D	G	G	V	L	L	S	L	A	G	L	P	S	V	V	D	V	D	T	A	A	R	T	V	R	V	G	G	G	V	R	Y	A	E	L	A	R	V	V	H	A	R
Template Known Secondary structure				S	S												S	.	.	.	.	S					S	S					S	S	T	T				T	T						S	T	T	S								T	T	T	T						T	T		B											T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	M	L	P	C	E	P	P	H	Y	G	E	E	A	T	W	G	G	M	V	A	C	G	L	A	G	P	R	R	P	W	S	G	S	V	R	D	F	V	L	G	T	R	I	I	T	G	A	G	K	H	L	R	F	G	G	E	V	M	K	N	V	A	G	Y	D	L	S	R	L	M	V	G	S	Y	G	C	L	G
Query Conservation
Alig confidence												.	.																.																												.	.	.	.	.	.	.
Template Conservation												.	.																.																												.	.	.	.	.	.	.
Template Sequence		G	L	A	L	P	N	M	A	S	L	.	.	P	H	I	S	V	A	G	S	V	A	T	G	T	H	G	.	S	G	V	G	N	G	S	L	A	S	V	V	R	E	V	E	L	V	T	A	D	G	S	T	V	V	I	.	.	.	.	.	.	.	A	R	G	D	E	R	F	G	G	A	V	T	S	L	G	A	L	G
Template Known Secondary structure		T				S				S	S	.	.	S		S	B								T				.			T	T				G	G	G	G									T	T	S						.	.	.	.	.	.	.		T	T	S	T	T	G	G	G	T	S	S	S	T	T	T	T
Template Predicted Secondary structure												.	.																.																												.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.								150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																					.	.	.	.	.	.	.	220
Predicted Secondary structure																													.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	T	E	I	S	M	K	V	L	P	R	P	R	A	S	L	S	L	R	R	E	I	S	L	Q	E	.	A	M	S	E	I	A	E	W	Q	L	Q	P	L	P	I	S	G	L	C	Y	F	D	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	W	I	R	L	E	G	G
Query Conservation																													.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	T	S	L	T	L	D	L	E	P	A	Y	E	M	E	Q	H	V	F	T	E	L	P	L	A	G	L	D	P	A	T	F	E	T	V	M	A	A	A	Y	S	V	S	L	F	T	D	W	R	A	P	G	F	R	Q	V	W	L	K	R	R	T	D	R	P	L	D	G	F	P	Y	A	A	P	A	A	E	K	M
Template Known Secondary structure																										S	T	T											T	S	S	S								S	S	S	S	S										T	T	S						T	T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																							.	.	.																	.																				.	.	.	.
Query SS confidence																																							.	.	.																	.																				.	.	.	.
Query Sequence		E	G	S	V	K	A	A	R	E	L	L	G	G	E	E	V	A	G	Q	F	W	Q	Q	L	R	E	Q	Q	L	P	F	F	S	L	P	G	T	.	.	.	L	W	R	I	S	L	P	S	D	A	P	M	M	D	L	P	.	G	E	Q	L	I	D	W	G	G	A	L	R	W	L	K	S	T	A	E	.	.	.	.
Query Conservation																																							.	.	.																	.																				.	.	.	.
Alig confidence																																							.	.	.																	.																				.	.	.	.
Template Conservation
Template Sequence		H	P	V	P	G	M	P	A	V	N	C	T	E	Q	F	G	V	P	G	P	W	H	E	R	L	P	H	F	R	A	E	F	T	P	S	S	G	A	E	L	Q	S	E	Y	L	M	P	R	E	H	A	L	A	A	L	H	A	M	D	A	I	R	E	T	L	A	P	V	L	Q	T	C	E	I	R	T	V	A	A	D
Template Known Secondary structure			S	S	T	T	S		G	G	G	B				T	T					G	G	G	T	S	S	S	B		T	T				S			S										G	G	G											T					G	G	G												B
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
																															293	.	.	.	.	.	.	300	.	.	.	.	.	.	.					.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	Q	I	H	R	I	A	R	N	A	G	G	H	A	.	.	.	.	T	R	F	S	A	G	D	G	G	F	A	P	L	S	A	P	L	F	R	Y	H	Q	Q	L	K	Q	Q	L	D	P	C	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.														.	.
Template Conservation																																																															.	.
Template Sequence		A	Q	W	L	S	P	A	Y	G	R	D	T	V	A	A	H	F	T	W	V	E	D	T	A	A	V	L	P	V	V	R	R	L	E	E	A	L	V	P	F	A	A	R	P	H	W	G	K	V	F	T	V	P	A	G	E	L	R	A	L	Y	.	.	P	R	L	A	D	F	G	A	L	A	G	A	L	D	P	A	G
Template Known Secondary structure			S	T	T		T	T	B	T	S											S																	G	G	G	T					T	T	S											T	T		.	.	T	T													T	T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.			.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		340	.		.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		V	F	.	N	P
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		K	F	T	N	A
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions