Job Description P52073 Confidence 100.00% Date Thu Jan 5 12:05:09 GMT 2012 Rank 7 Aligned Residues 335 % Identity 16% Template c2bvfA_ PDB info PDB header:oxidase Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase; PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1) Resolution 1.92 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		D	Y	S	Q	A	L	L	E	Q	V	N	Q	A	I	S	D	K	T	P	L	V	I	Q	G	S	N	S	K	A	F	L	G	R	P	V	.	T	G	Q	T	L	D	V	R	C	H	R	G	I	V	N	Y	D	P	T	E	L	V	I	T	A	R	V	G	T	P	L	V	T	I	E	A	A	L	E	S	A	G	Q	M
Query Conservation																																					.
Alig confidence																																					.														.
Template Conservation																																																			.
Template Sequence		L	S	A	G	D	V	A	K	S	V	R	Y	A	C	D	N	G	L	E	I	S	V	R	S	G	G	H	N	P	N	G	Y	A	T	N	D	G	G	I	V	L	D	L	R	L	M	N	S	I	.	H	I	D	T	A	G	S	R	A	R	I	G	G	G	V	I	S	G	D	L	V	K	E	A	A	K	F	G	L	A
Template Known Secondary structure			S															T							S	S				T	T		T	T			S	S	S						T	T					.				T	T	T	T						T	T		B										T	T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	C	E	P	P	H	Y	G	E	E	A	T	W	G	G	M	V	A	C	G	L	A	G	P	R	R	P	W	S	G	S	V	R	D	F	V	L	G	T	R	I	I	T	G	A	G	K	H	L	R	F	G	G	E	V	M	K	N	V	A	G	Y	D	L	S	R	L	M	V	G	S	Y	G	C	L	G	V	L	T
Query Conservation
Alig confidence							.	.	.																																																.	.	.	.	.
Template Conservation							.	.	.																																																.	.	.	.	.
Template Sequence		A	V	T	G	M	.	.	.	H	P	K	V	G	F	C	G	L	A	L	N	G	G	V	G	F	L	T	P	K	Y	G	L	A	S	D	N	I	L	G	A	T	L	V	T	A	T	G	D	V	I	Y	C	S	D	D	.	.	.	.	.	E	R	P	E	L	F	W	A	V	R	G	A	G	P	N	F	G	V	V	T
Template Known Secondary structure						S	.	.	.		T	T	S	B						T	T					T	T							G	G	G	G									T	T	S							S	S	.	.	.	.	.	S	S											G	G	G	T
Template Predicted Secondary structure							.	.	.																																																.	.	.	.	.
Template SS confidence
		125	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.														.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																										.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	S	M	K	V	L	P	R	P	R	A	S	L	S	L	R	R	E	I	S	L	Q	E	.	A	M	S	E	I	A	E	W	Q	L	Q	P	L	P	I	S	G	L	C	Y	F	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	W	I	R	L	E	G	G	E	G	S	V	K	A	A	R	E	L
Query Conservation																										.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	E	V	Q	L	Y	E	L	P	R	K	M	L	A	G	F	I	T	W	A	P	S	V	S	E	L	A	G	L	L	T	S	L	L	D	A	L	N	E	M	A	D	H	I	Y	P	S	V	F	V	G	V	D	E	N	R	A	P	S	V	T	V	C	V	G	H	L	G	G	L	D	I	A	E	R	D	I	A	R
Template Known Secondary structure																																										T	T	T	T											T	T													S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		231	.	.													.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.																																									.	.																				.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.																																									.	.																				.	.	.	.
Query Sequence		L	G	G	.	.	.	.	.	.	.	.	.	.	.	.	E	E	V	A	G	Q	F	W	Q	Q	L	R	E	Q	Q	L	P	F	F	S	L	P	G	T	L	W	R	I	S	L	P	S	D	A	P	M	M	D	L	P	.	.	G	E	Q	L	I	D	W	G	G	A	L	R	W	L	K	S	T	A	E	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.																																									.	.																				.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																																									.	.																				.	.	.	.
Template Conservation
Template Sequence		L	R	G	L	G	R	T	V	S	D	S	I	A	V	R	S	Y	D	E	V	V	A	L	N	A	E	V	G	S	F	E	D	G	M	S	N	L	W	I	D	R	E	I	A	M	P	N	A	R	F	A	E	A	I	A	G	N	L	D	K	F	V	S	E	P	A	S	G	G	S	V	K	L	E	I	E	G	M	P	F
Template Known Secondary structure				T	T	S			S																				S					S												S											T	T	G	G	G					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
																																					293	.	.	.	.	.	.	300	.	.	.	.	.									.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	Q	I	H	R	I	A	R	N	A	G	G	.	.	.	.	.	.	.	.	H	A	T	R	F	S	A	G	D	G	G	F	A	P	L	S	A	P	L	F	R	Y	H	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	P	K	R	T	P	A	R	H	R	D	A	M	G	V	L	A	L	A	E	W	S	G	A	A	P	G	S	E	K	Y	P	E	L	A	R	E	L	D	A	A	L	L	R	A	G	V	T	T	S	G	F	G	L	L	N	N	N	S	E	V	T	A	E	M	V	A	E	V	Y	K	P	E	V	Y	S	R	L	A
Template Known Secondary structure				T	T			S	S				S	S											T	T	S	T	T	T	T																T	T									G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	K	Q	Q	L	D	P	C	G	V	F	N	P	G	R	M	Y	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	K	R	E	Y	D	P	E	N	R	F	R	H	N	Y	N	I	D	P
Template Known Secondary structure									T	T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions