Phyre 2 alignment of P0A9V8 with c3k96B

Job Description P0A9V8
Confidence 99.93% Date Thu Jan 5 11:11:30 GMT 2012

Rank 34 Aligned Residues 278

% Identity 14% Template c3k96B_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+]; PDBTitle: 2.1 angstrom resolution crystal structure of glycerol-3-phosphate2 dehydrogenase (gpsa) from coxiella burnetii

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.															.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure			.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	M	A	.	A	I	A	F	I	G	L	G	Q	M	G	S	P	M	A	S	N	L	L	Q	Q	G	H	Q	L	R	V	F	D	V	N	A	E	A	V	R	H	L	V	D	K	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	A	A	N	P	A	Q	A	A	K	D	A	E	F	I	I	T	M	L
Query Conservation			.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	F	K	H	P	I	A	I	L	G	A	G	S	W	G	T	A	L	A	L	V	L	A	R	K	G	Q	K	V	R	L	W	S	Y	E	S	D	H	V	D	E	M	Q	A	E	G	V	N	N	R	Y	L	P	N	Y	P	F	P	E	T	L	K	A	Y	C	D	L	K	A	S	L	E	G	V	T	D	I	L	I	V	V
Template Known Secondary structure			S								S												T	T	T								S												S	S	B	T	T	T	B	T	T					T	T					S							T	T
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence	P	N	G	D	L	V	R	N	V	L	F	G	E	N	G	V	C	E	G	L	S	T	D	A	L	V	I	D	M	S	T	I	H	P	L	.	.	.	.	Q	T	D	K	L	I	A	D	M	Q	A	K	G	F	S	M	M	D	V	P	V	G	R	T	S	A	N	A	I	T	G	T	L	L	L	L	A	G	G	T	A
Query Conservation																																				.	.	.	.
Alig confidence					.	.	.	.																												.	.	.	.
Template Conservation					.	.	.	.
Template Sequence	P	S	F	A	.	.	.	.	F	H	E	V	I	T	R	M	K	P	L	I	D	A	K	T	R	I	A	W	G	T	K	G	L	A	K	G	S	R	L	L	H	E	V	V	A	T	E	L	G	Q	V	P	M	A	V	I	S	G	P	S	L	A	T	E	V	A	A	N	L	P	T	A	V	S	L	A	S	N	N	S
Template Known Secondary structure					.	.	.	.									T	T	T			T	T									S			T	T	T													S								S	S								T	T										S
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
	84	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.

	142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.																		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	Q	V	E	R	A	T	P	I	L	M	A	M	G	S	E	L	I	N	A	G	G	P	G	M	G	I	R	V	K	L	I	N	N	Y	M	S	I	A	L	N	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	E	A	A	V	L	C	E	A	L	N	L	P	F	D	V	A	V	K
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Q	F	S	K	D	L	I	E	R	L	H	G	Q	R	F	R	V	Y	K	N	D	D	M	I	G	V	E	L	C	G	S	V	K	N	I	L	A	I	A	T	G	I	S	D	G	L	K	L	G	S	N	A	R	A	A	L	I	T	R	G	L	T	E	M	G	R	L	V	S	V	F	G	G	K	Q	E	T	L	T	G
Template Known Secondary structure													S	S							S																									T	T																									T							T	S
Template Predicted Secondary structure
Template SS confidence
	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.											.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.
Query Sequence	V	M	S	G	T	A	A	G	K	G	H	F	T	T	S	W	P	N	K	V	L	S	G	D	L	S	P	A	F	M	I	D	L	A	.	.	.	.	.	.	.	.	.	.	H	K	D	L	G	I	A	L	D	V	A	N	Q	L	H	V	P	M	P	L	G	A	A	S	R	E	V	Y	S	Q	A	R	A	A	G	R
Query Conservation																																			.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.
Template Sequence	L	A	G	L	G	D	L	V	L	T	C	T	D	N	Q	S	R	N	R	R	F	G	L	A	L	G	E	G	V	D	K	K	E	A	Q	Q	A	I	G	Q	A	I	E	G	L	Y	N	T	D	Q	V	H	A	L	A	Q	K	H	A	I	E	M	P	L	T	F	Q	V	H	R	I	L	H	E	.	.	.	.	.	.
Template Known Secondary structure	T	T	T											T	T												T	T												S																		T	T															S	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.
Template SS confidence
	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	R	Q	D	W	S	A	I	L	E	Q	V	R	V	S
Query Conservation
Alig confidence	.
Template Conservation	.
Template Sequence	.	D	L	D	P	Q	Q	A	V	Q	E	L	L	E	R
Template Known Secondary structure	.
Template Predicted Secondary structure	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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